RNA id: TU486972


Basic Information

Item Value
RNA id TU486972
length 1536
lncRNA type read_through
GC content 0.40
exon number 3
gene id G424072
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9442404 ~ 9449831 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTCCCGTTCTGTCTCCAGTCTGGGTCATTTGCACTGACAGAACAAACAGAGGTGCCTGCTTTGTTATTTTCACTTATATAAGCACTGTATGACTGCTGCTCAAATACAGGAGGATTGTCATTCACATCTGAGACAAATAAATGAATCGTCATGGAGGTGGATAATGGTGGAGATCCCCCATCTGTGGCTGTGATGGTAATGTTGTAATCAGATTCTTTCTCTCGGTCTAGAGCTTTTGTAGTTACTAGAGAGAAATAGTTTTTAACAGATGGGTTCAGTTTGAAAGGAACATTTTGCTGAACAGAGCAACGAATCTGCCGGTTTTCTCCTGAGTCTTTGTCTTGAACATTAATGATTCCCACTTCAGTACCTGGCTCAGAGTTTTCAGGTATCGGGTTATTCAAAGATTTAAGGATGATTCTAGGAGGATTATCATTAACATCAGTTATATCTATGATGACTTTAGCAGTTGATGCCAATCCAGATGCATCTTTGGACTGAACTATCATTTCATAGTTCCTTTCATTTTCATAGTCTATTTCTCCTCTCACCACAATTTGTCCAGTTGTCTTATCAATAGAAAATAATTTTACAGCTTTATCTGATATTCTGCTGAATTCATACGTCACTTCCCCGTTTGGACCTTCATCAGCATCTGTGGCGCTCACTCTGATTATTTCTGTTCCTGAAGGTGTATTTTCAGCCAGAGTGACCTTATAAACAGGCTGACTAAATACTGGAACATTATCATTGGCATCAAGAACAGTGATGTGTATGACAGCAGTGCCAGACCTCTGCGGTGAACCTCCATCAGTGGCTGTGAGAATCATATCTATCTCCTTCTGCTGTTCACGATCCAGCTCCTTTTCCAACAAAAGTTCAGCATATTTCCCTCCGTCTGCACTATCATGTACAGTCAATATGAAATTTTTATTTTTCTCCAGTGAATAGCTATTAACAGCATTTTGTCCGATATCCATGTCATGCGCCTCATGCAAACGGAATCGCTGGCCTTTAACTGCTGATTCTGTGATTTCAAAGTTAAAACGGTCACTTGGAAATTGTGGCGCATTGTCATTTATATCGTCAATATTCATAATTATACGGTGTACTTCAAGAGGGTTTTCCAGGACGAGCTCATAACTGAGAGTACAGGGAATTTGAGATCCACAAAGCTCCTCTCGGTCTATTGTCTCTGCCACGATTAAATCACCAGTATGCAGATTAATATCACAATACCGTTTGCTGCTGTCCTCCGTGTCTATCCGAGCTTTACGAGCAGATAGTAGTTTAACATCCATCCTGAGATCCTTCGCTATATTTCCAATCACATACTGGCGCTTCGTTTCTTCCGGAATATTGTAGCTCAGATCTGCACAGACGGTATTAAGGGGAAACAAAAGGAGAGCCAGGAAAAACCCAAAAAAAGGAAATGAAAATAACCTGTATTCCATATTGACGATTTGATGTTGAATCTGTCCAACAGTAAATTAATCTTTGACAGATGATATTCCAATAATTCAATCAGCGTCGAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU487027 lncRNA downstream 24217 9415420 ~ 9418187 (-) True G424123
TU487014 lncRNA downstream 42094 9384197 ~ 9400310 (-) True G424110
TU487012 lncRNA downstream 47998 9380492 ~ 9394406 (-) False G424110
TU486947 lncRNA downstream 67959 9316659 ~ 9374445 (-) True G424051
TU486952 lncRNA downstream 110914 9328334 ~ 9331490 (-) True G424054
TU486953 lncRNA upstream 2311 9452142 ~ 9466322 (-) True G424055
TU487006 lncRNA upstream 7203 9457034 ~ 9459751 (-) True G424106
TU486960 lncRNA upstream 11302 9461133 ~ 9475049 (-) True G424060
TU486965 lncRNA upstream 21239 9471070 ~ 9497593 (-) True G424065
TU486949 lncRNA upstream 49176 9499007 ~ 9503311 (-) True G424052
CI01000304_09342385_09345935.mRNA mRNA downstream 96469 9341854 ~ 9345935 (-) True CI01000304_09342385_09345935
CI01000304_09284328_09286980.mRNA mRNA downstream 155372 9284189 ~ 9287032 (-) True CI01000304_09284328_09286980
CI01000304_09046090_09129612.mRNA mRNA downstream 312792 9046090 ~ 9129612 (-) True CI01000304_09046090_09129612
CI01000304_08913076_08936241.mRNA mRNA downstream 506163 8912702 ~ 8936241 (-) True CI01000304_08913076_08936241
CI01000304_08904762_08909795.mRNA mRNA downstream 531914 8904478 ~ 8910490 (-) True CI01000304_08904762_08909795
CI01000304_09508090_09519201.mRNA mRNA upstream 57466 9507297 ~ 9519333 (-) True CI01000304_09508090_09519201
CI01000304_09566730_09575706.mRNA mRNA upstream 116899 9566730 ~ 9575706 (-) False CI01000304_09566730_09575706
CI01000304_09577749_09578512.mRNA mRNA upstream 126288 9576119 ~ 9578512 (-) True CI01000304_09577749_09578512
CI01000304_09609674_09619712.mRNA mRNA upstream 159679 9609510 ~ 9620030 (-) True CI01000304_09609674_09619712
CI01000304_09622805_09640521.mRNA mRNA upstream 172545 9622376 ~ 9640540 (-) True CI01000304_09622805_09640521
TU486232 other downstream 577108 8862223 ~ 8865296 (-) True G423386
TU485601 other downstream 1789701 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 2659358 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 2810905 6631086 ~ 6631499 (-) True G422354
TU484958 other downstream 2958909 6477451 ~ 6479033 (-) True G422250
TU487066 other upstream 118525 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 286915 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 703615 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 704028 10153859 ~ 10164330 (-) True G424458
TU487433 other upstream 740743 10192696 ~ 10192895 (-) True G424459

Expression Profile