RNA id: TU486971


Basic Information

Item Value
RNA id TU486971
length 590
lncRNA type read_through
GC content 0.44
exon number 2
gene id G424071
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9443332 ~ 9450425 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGAACCAAACTGAATATTGTCTTCCTTTCTCAGAGTCCCACCAGCAGGAAGCGTGTTTTCATTATACGATCTCACAAATTTAAAGTCACTTGTGCGCGAGCCTGTGGTTAGATACGCGTCATAATTGTAGGAGCTGCGGAGAGTTCCTGCTCCATCCACCTCTGCATAGTTGGGAGGCAGATAGGCGCTGGGAACAGCAACCGCTCCATCAAACAACAGTCTGGGCTTTCTCCTGTGACAAAACTTCACTGCCAAGATCAGTATGATGAACGTCAGGAAGAAGGTGCACACGGAAACTAATGCAATGATCAAGTATGACGTCAGTTTAGAGTTGTTGTCCTCATAAGTCATATCTTTAAGTTCAGGAACTTCAGAAAGGTTGTCAGAAATCAGTAAATTCACAGCACAGGTTGTAGACAGAGAGGGCTGCCCATTATCCTTCACTGAAATAACAAGATTCTGCTTCATATTGTCAGATTCAGAAATGTCTCGTTGTGTTTTGATCTCTCCACTATGGAGACCAATGGTGAAAAGTCCCGGATCAGTAGATTTCAAGATCTGATAGGACAGCCATGCGTTCTGTCCAGAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU487027 lncRNA downstream 25145 9415420 ~ 9418187 (-) True G424123
TU487014 lncRNA downstream 43022 9384197 ~ 9400310 (-) True G424110
TU487012 lncRNA downstream 48926 9380492 ~ 9394406 (-) False G424110
TU486947 lncRNA downstream 68887 9316659 ~ 9374445 (-) True G424051
TU486952 lncRNA downstream 111842 9328334 ~ 9331490 (-) True G424054
TU486953 lncRNA upstream 1717 9452142 ~ 9466322 (-) True G424055
TU487006 lncRNA upstream 6609 9457034 ~ 9459751 (-) True G424106
TU486960 lncRNA upstream 10708 9461133 ~ 9475049 (-) True G424060
TU486965 lncRNA upstream 20645 9471070 ~ 9497593 (-) True G424065
TU486949 lncRNA upstream 48582 9499007 ~ 9503311 (-) True G424052
CI01000304_09342385_09345935.mRNA mRNA downstream 97397 9341854 ~ 9345935 (-) True CI01000304_09342385_09345935
CI01000304_09284328_09286980.mRNA mRNA downstream 156300 9284189 ~ 9287032 (-) True CI01000304_09284328_09286980
CI01000304_09046090_09129612.mRNA mRNA downstream 313720 9046090 ~ 9129612 (-) True CI01000304_09046090_09129612
CI01000304_08913076_08936241.mRNA mRNA downstream 507091 8912702 ~ 8936241 (-) True CI01000304_08913076_08936241
CI01000304_08904762_08909795.mRNA mRNA downstream 532842 8904478 ~ 8910490 (-) True CI01000304_08904762_08909795
CI01000304_09508090_09519201.mRNA mRNA upstream 56872 9507297 ~ 9519333 (-) True CI01000304_09508090_09519201
CI01000304_09566730_09575706.mRNA mRNA upstream 116305 9566730 ~ 9575706 (-) False CI01000304_09566730_09575706
CI01000304_09577749_09578512.mRNA mRNA upstream 125694 9576119 ~ 9578512 (-) True CI01000304_09577749_09578512
CI01000304_09609674_09619712.mRNA mRNA upstream 159085 9609510 ~ 9620030 (-) True CI01000304_09609674_09619712
CI01000304_09622805_09640521.mRNA mRNA upstream 171951 9622376 ~ 9640540 (-) True CI01000304_09622805_09640521
TU486232 other downstream 578036 8862223 ~ 8865296 (-) True G423386
TU485601 other downstream 1790629 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 2660286 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 2811833 6631086 ~ 6631499 (-) True G422354
TU484958 other downstream 2959837 6477451 ~ 6479033 (-) True G422250
TU487066 other upstream 117931 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 286321 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 703021 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 703434 10153859 ~ 10164330 (-) True G424458
TU487433 other upstream 740149 10192696 ~ 10192895 (-) True G424459

Expression Profile