RNA id: TU486960


Basic Information

Item Value
RNA id TU486960
length 515
lncRNA type read_through
GC content 0.43
exon number 3
gene id G424060
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9461133 ~ 9475049 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

NNNNNCGATTAGATATTTCAGATACATCCAAACCGAGATCTTTAGCTACATTTCCAACAATAGATCCCTCCTTCAGCTCCTCGGGTATTGTATAACGAANNNNNNCAATGTACTCACTGCTGTCCGCGGTGAAAACACGCGCTTTTCCTGAAATCAGTCTCTTCGGCTCAAGCCCAAGGTCCGAGGCAATATTTCCAACAAACGAGCCCACCGACATTTCCTCGGGTATAGAATAACGAATCTGTCCGCTCACGCGAGAGGAAAATAAAGCCAGCGCGCATACTGTATAGAAGAAGAGCGACCCATGTAACCATCCTTTTCCTCCTGACTCCATTTTTGGTCAACAATGATCCAGCAAAAGCATTTAAAATAGCAAAATGTGCGATCAGTTATATGTTTCCAGCAATCTGCGTCTTCGTTCGGGTTATAGAATCTGGAGACCAAACTGAACTCGATTTGGTGGTCTGTTATGCAGCATCCAATGTTAGTTGTTGATGCTGTCTGAATTATGCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU487008 lncRNA downstream 1382 9360776 ~ 9459751 (-) False G424106
TU487006 lncRNA downstream 1382 9457034 ~ 9459751 (-) True G424106
TU486971 lncRNA downstream 10708 9443332 ~ 9450425 (-) True G424071
TU486972 lncRNA downstream 11302 9442404 ~ 9449831 (-) True G424072
TU487027 lncRNA downstream 42946 9415420 ~ 9418187 (-) True G424123
TU486949 lncRNA upstream 23958 9499007 ~ 9503311 (-) True G424052
TU487062 lncRNA upstream 45094 9520143 ~ 9520401 (-) True G424158
TU487071 lncRNA upstream 54634 9529683 ~ 9531324 (-) True G424162
TU487105 lncRNA upstream 87673 9562722 ~ 9563089 (-) True G424181
TU487112 lncRNA upstream 170448 9645497 ~ 9645723 (-) True G424187
CI01000304_09342385_09345935.mRNA mRNA downstream 115198 9341854 ~ 9345935 (-) True CI01000304_09342385_09345935
CI01000304_09284328_09286980.mRNA mRNA downstream 174101 9284189 ~ 9287032 (-) True CI01000304_09284328_09286980
CI01000304_09046090_09129612.mRNA mRNA downstream 331521 9046090 ~ 9129612 (-) True CI01000304_09046090_09129612
CI01000304_08913076_08936241.mRNA mRNA downstream 524892 8912702 ~ 8936241 (-) True CI01000304_08913076_08936241
CI01000304_08904762_08909795.mRNA mRNA downstream 550643 8904478 ~ 8910490 (-) True CI01000304_08904762_08909795
CI01000304_09508090_09519201.mRNA mRNA upstream 32248 9507297 ~ 9519333 (-) True CI01000304_09508090_09519201
CI01000304_09566730_09575706.mRNA mRNA upstream 91681 9566730 ~ 9575706 (-) False CI01000304_09566730_09575706
CI01000304_09577749_09578512.mRNA mRNA upstream 101070 9576119 ~ 9578512 (-) True CI01000304_09577749_09578512
CI01000304_09609674_09619712.mRNA mRNA upstream 134461 9609510 ~ 9620030 (-) True CI01000304_09609674_09619712
CI01000304_09622805_09640521.mRNA mRNA upstream 147327 9622376 ~ 9640540 (-) True CI01000304_09622805_09640521
TU486232 other downstream 595837 8862223 ~ 8865296 (-) True G423386
TU485601 other downstream 1808430 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 2678087 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 2829634 6631086 ~ 6631499 (-) True G422354
TU484958 other downstream 2977638 6477451 ~ 6479033 (-) True G422250
TU487066 other upstream 93307 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 261697 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 678397 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 678810 10153859 ~ 10164330 (-) True G424458
TU487433 other upstream 715525 10192696 ~ 10192895 (-) True G424459

Expression Profile