RNA id: TU486727


Basic Information

Item Value
RNA id TU486727
length 332
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G423843
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9520482 ~ 9520813 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAAAGCTGAATAAATAAGCTTTACCTTGATGTATGATGTTTGCTAGGATAGGACAATATTTGGCCGAGATACAACTATTTGAAAATCTGGAATCTGAGGGTGCAAAAAAAAAAAAAAATCAAAATATTGAGAAAATCACCTTTAAAGTTGTCCAAATAAAGTCCTTAGCAATGCATATCCACTCACAAAAATCATTTTTTGATATATACGGTAGGAAATTTACAAAATATCTTCATGGAACATGATCTTTACTTAATATCCTAATGATTTTTGCCATAAAAGAAAAATCGATAATTTTGACCCATACAATGTAATGTTGGCTATTGCTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486710 lncRNA upstream 2125 9517871 ~ 9518357 (+) True G423826
TU486624 lncRNA upstream 57544 9459852 ~ 9462938 (+) True CI01000304_09457224_09468602
TU486632 lncRNA upstream 190843 9329053 ~ 9329639 (+) True G423753
TU486690 lncRNA upstream 217406 9302829 ~ 9303076 (+) True G423809
TU486684 lncRNA upstream 227319 9292803 ~ 9293163 (+) True G423803
TU486733 lncRNA downstream 7163 9527976 ~ 9528197 (+) True G423848
TU486720 lncRNA downstream 45608 9566421 ~ 9567016 (+) True G423836
TU486752 lncRNA downstream 49205 9570018 ~ 9570273 (+) True G423867
TU486725 lncRNA downstream 58762 9579575 ~ 9609161 (+) True G423841
TU486726 lncRNA downstream 137433 9658246 ~ 9659272 (+) True G423842
CI01000304_09494392_09503344.mRNA mRNA upstream 16894 9494392 ~ 9503588 (+) True CI01000304_09494392_09503344
CI01000304_09491577_09494024.mRNA mRNA upstream 26458 9491577 ~ 9494024 (+) True CI01000304_09491577_09494024
CI01000304_09488898_09490778.mRNA mRNA upstream 29514 9488541 ~ 9490968 (+) True CI01000304_09488898_09490778
CI01000304_09484625_09487668.mRNA mRNA upstream 32790 9484625 ~ 9487692 (+) True CI01000304_09484625_09487668
CI01000304_09481220_09484457.mRNA mRNA upstream 35936 9481220 ~ 9484546 (+) True CI01000304_09481220_09484457
CI01000304_09529802_09531061.mRNA mRNA downstream 8578 9529391 ~ 9531304 (+) True CI01000304_09529802_09531061
CI01000304_09532680_09535197.mRNA mRNA downstream 11867 9532680 ~ 9536431 (+) True CI01000304_09532680_09535197
CI01000304_09564068_09565679.mRNA mRNA downstream 40192 9561005 ~ 9565778 (+) False CI01000304_09564068_09565679
CI01000304_09683383_09690928.mRNA mRNA downstream 162570 9683383 ~ 9690941 (+) True CI01000304_09683383_09690928
CI01000304_09692774_09694613.mRNA mRNA downstream 171961 9692774 ~ 9694613 (+) True CI01000304_09692774_09694613
TU486477 other upstream 571060 8949036 ~ 8949422 (+) True G423614
TU486091 other upstream 847927 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU485809 other upstream 1285522 8234441 ~ 8234534 (+) True G423009
TU485573 other upstream 1539747 7978628 ~ 7978814 (+) True G422786
TU484021 other upstream 2035794 7484141 ~ 7484688 (+) True G421435
TU486746 other downstream 43792 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU487178 other downstream 599586 10120399 ~ 10127322 (+) True G424246
TU487194 other downstream 668009 10188822 ~ 10189404 (+) False G424251
TU487195 other downstream 668502 10189315 ~ 10189404 (+) True G424251
TU487556 other downstream 1034473 10555614 ~ 10555704 (+) True G424559

Expression Profile