RNA id: TU486720


Basic Information

Item Value
RNA id TU486720
length 596
lncRNA type antisense_over
GC content 0.38
exon number 1
gene id G423836
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9566421 ~ 9567016 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGCTCTTTTATCCACTGTACAACAGAAATGCTCAGTACAAACCATTTTTCTTATTAGGCTTTTATTTATTATGCTCAATATGTTATTGGCAGGATAAAAACAAATGCCTTGCTGATTAACCCTAAGTATAGAAGAGAACCACAAGATTAAACCAAAATCAGAATTCAGAATGTTCTTAAGTTTGGACAAAACCTTTTTAAGGATTACATTACTGTCCTCTCCCCTTTTTTTTTTTTTTTTTTCTTATTCTGTGTCTTTAGAGTTCAACCTACTGTAATGAAAATAGCAACAAAAACAACAAATCATTACTGGAAGGTGATTAAGTATTCTGGGTAAGCCTGTACATCATTGAAGATCACAAACATGGTTGGGTTGTTGATGTCGTCAGTCACACTGTTATAGAGATCAGCACTATTTGAGCTCTTCGCAGGGGGAACAGGAAGGCCTCGTTTTCCTTGAGTGAAATCACCGACAAGCACCCTGGCGAGGTACATGCGTTTAAGTCCTTTGGCATCAGGATTTGAGTAGCCTTGGGCTGAGTAAATCGGGTCCACAGCAAAATATGTACCATTCCCATACACGGCTCCTAAAAATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486733 lncRNA upstream 38224 9527976 ~ 9528197 (+) True G423848
TU486727 lncRNA upstream 45608 9520482 ~ 9520813 (+) True G423843
TU486710 lncRNA upstream 48064 9517871 ~ 9518357 (+) True G423826
TU486624 lncRNA upstream 103483 9459852 ~ 9462938 (+) True CI01000304_09457224_09468602
TU486632 lncRNA upstream 236782 9329053 ~ 9329639 (+) True G423753
TU486752 lncRNA downstream 3002 9570018 ~ 9570273 (+) True G423867
TU486725 lncRNA downstream 12559 9579575 ~ 9609161 (+) True G423841
TU486726 lncRNA downstream 91230 9658246 ~ 9659272 (+) True G423842
TU486761 lncRNA downstream 92692 9659708 ~ 9660158 (+) True G423876
TU486765 lncRNA downstream 93418 9660434 ~ 9660844 (+) True G423877
CI01000304_09564068_09565679.mRNA mRNA upstream 643 9561005 ~ 9565778 (+) False CI01000304_09564068_09565679
CI01000304_09532680_09535197.mRNA mRNA upstream 29990 9532680 ~ 9536431 (+) True CI01000304_09532680_09535197
CI01000304_09529802_09531061.mRNA mRNA upstream 35117 9529391 ~ 9531304 (+) True CI01000304_09529802_09531061
CI01000304_09494392_09503344.mRNA mRNA upstream 62833 9494392 ~ 9503588 (+) True CI01000304_09494392_09503344
CI01000304_09491577_09494024.mRNA mRNA upstream 72397 9491577 ~ 9494024 (+) True CI01000304_09491577_09494024
CI01000304_09683383_09690928.mRNA mRNA downstream 116367 9683383 ~ 9690941 (+) True CI01000304_09683383_09690928
CI01000304_09692774_09694613.mRNA mRNA downstream 125758 9692774 ~ 9694613 (+) True CI01000304_09692774_09694613
CI01000304_09695997_09696577.mRNA mRNA downstream 128981 9695997 ~ 9697143 (+) True CI01000304_09695997_09696577
CI01000304_09757695_09760278.mRNA mRNA downstream 190077 9757093 ~ 9760699 (+) True CI01000304_09757695_09760278
CI01000304_09879900_09938234.mRNA mRNA downstream 312838 9879854 ~ 9939321 (+) True CI01000304_09879900_09938234
TU486746 other upstream 848 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU486477 other upstream 616999 8949036 ~ 8949422 (+) True G423614
TU486091 other upstream 893866 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU485809 other upstream 1331461 8234441 ~ 8234534 (+) True G423009
TU485573 other upstream 1585686 7978628 ~ 7978814 (+) True G422786
TU487178 other downstream 553383 10120399 ~ 10127322 (+) True G424246
TU487194 other downstream 621806 10188822 ~ 10189404 (+) False G424251
TU487195 other downstream 622299 10189315 ~ 10189404 (+) True G424251
TU487556 other downstream 988270 10555614 ~ 10555704 (+) True G424559
TU488854 other downstream 2861689 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019

Expression Profile