RNA id: TU487113



Basic Information


Item Value
RNA id TU487113
length 252
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G424188
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9645814 ~ 9646065 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CGAATTCACGCACTCGTTTAATTTACTCCTTCAAGTGGACTATATTAGTGGAGTAACGTAGGGAACAGTGAATGAGTGTATAGGGGGCGATTTCGAACATAGCAACAGTGTTGATGGGGTTGGGTGCTGTTTACACTAGCCTAATCCATTGAAATTCAACACCAGAACTTTAACTCTTTACTCTAAGAGTCCTTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATTTATTACTCACGCTCATGCCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU487112 lncRNA downstream 91 9645497 ~ 9645723 (-) True G424187
TU487105 lncRNA downstream 82725 9562722 ~ 9563089 (-) True G424181
TU487071 lncRNA downstream 114490 9529683 ~ 9531324 (-) True G424162
TU487062 lncRNA downstream 125413 9520143 ~ 9520401 (-) True G424158
TU486949 lncRNA downstream 142503 9499007 ~ 9503311 (-) True G424052
TU487115 lncRNA upstream 3596 9649661 ~ 9649877 (-) True G424190
TU487079 lncRNA upstream 12265 9658330 ~ 9659287 (-) True G424170
TU487121 lncRNA upstream 13518 9659583 ~ 9660325 (-) True G424196
TU487122 lncRNA upstream 14530 9660595 ~ 9661017 (-) True G424197
TU487124 lncRNA upstream 22685 9668750 ~ 9668977 (-) True G424199
CI01000304_09622805_09640521.mRNA mRNA downstream 5274 9622376 ~ 9640540 (-) True CI01000304_09622805_09640521
CI01000304_09609674_09619712.mRNA mRNA downstream 25784 9609510 ~ 9620030 (-) True CI01000304_09609674_09619712
CI01000304_09577749_09578512.mRNA mRNA downstream 67302 9576119 ~ 9578512 (-) True CI01000304_09577749_09578512
CI01000304_09566730_09575706.mRNA mRNA downstream 70108 9566730 ~ 9575706 (-) False CI01000304_09566730_09575706
CI01000304_09508090_09519201.mRNA mRNA downstream 126481 9507297 ~ 9519333 (-) True CI01000304_09508090_09519201
CI01000304_09699524_09703985.mRNA mRNA upstream 53303 9699368 ~ 9706659 (-) True CI01000304_09699524_09703985
CI01000304_09720695_09725068.mRNA mRNA upstream 74211 9720276 ~ 9725068 (-) True CI01000304_09720695_09725068
CI01000304_09726631_09727403.mRNA mRNA upstream 79882 9725947 ~ 9730308 (-) True CI01000304_09726631_09727403
CI01000304_09737662_09738777.mRNA mRNA upstream 91161 9737226 ~ 9738777 (-) False CI01000304_09737662_09738777
CI01000304_09751291_09754997.mRNA mRNA upstream 104856 9750921 ~ 9755245 (-) True CI01000304_09751291_09754997
TU487066 other downstream 76780 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU486232 other downstream 780518 8862223 ~ 8865296 (-) True G423386
TU485601 other downstream 1993111 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 2862768 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 3014315 6631086 ~ 6631499 (-) True G422354
TU487077 other upstream 90681 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 507381 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 507794 10153859 ~ 10164330 (-) True G424458
TU487433 other upstream 544509 10192696 ~ 10192895 (-) True G424459
TU487810 other upstream 798290 10444355 ~ 10542665 (-) True G424808

Expression Profile