RNA id: TU486761


Basic Information

Item Value
RNA id TU486761
length 451
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G423876
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9659708 ~ 9660158 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAGTAGTGCCAAATAGATGAATATGCCAATGTTAGGATGGAGTTCCAGTGCCTCACTCTTTCATTCTTCACCTGGGTTCTTTCATCAGCACACTTTTCCACTTCCTTTTAGGTCCTATAAAAATCATCTTTTGTAATCACTTTTTTTACTTTAAAGAACAGTCTGGCCGCATTGTTTGGCAGTGATATTCTTTTCTCTCTTTCATCTCCCTTATCTCTTCTTTTTTTTTTTTTTTTTTTTTTACGAGTATCATAGCACTGTGTCAGCAGAAAAGCACTGCATGGTTCGTCTCCATGCCGACGGTGCCTGTGGAGATGCTGGAACCAAGCAGTGGCTGTTTATCTGCTGTCACTGAGTGCGGAGAGCCGGAACCTGGCTGCGCACTGCATGATGAACCCCGCCATCTCTCGACTCCCTTATTATATCTTCCTCACTGATAGATACTCTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486726 lncRNA upstream 436 9658246 ~ 9659272 (+) True G423842
TU486725 lncRNA upstream 50547 9579575 ~ 9609161 (+) True G423841
TU486752 lncRNA upstream 89435 9570018 ~ 9570273 (+) True G423867
TU486720 lncRNA upstream 92692 9566421 ~ 9567016 (+) True G423836
TU486733 lncRNA upstream 131511 9527976 ~ 9528197 (+) True G423848
TU486765 lncRNA downstream 276 9660434 ~ 9660844 (+) True G423877
TU486766 lncRNA downstream 1005 9661163 ~ 9661555 (+) True G423878
TU486780 lncRNA downstream 53903 9714061 ~ 9714287 (+) True G423892
TU487279 lncRNA downstream 402276 10062434 ~ 10062747 (+) True G424323
TU487282 lncRNA downstream 405937 10066095 ~ 10066360 (+) True G424326
CI01000304_09564068_09565679.mRNA mRNA upstream 93930 9561005 ~ 9565778 (+) False CI01000304_09564068_09565679
CI01000304_09532680_09535197.mRNA mRNA upstream 123277 9532680 ~ 9536431 (+) True CI01000304_09532680_09535197
CI01000304_09529802_09531061.mRNA mRNA upstream 128404 9529391 ~ 9531304 (+) True CI01000304_09529802_09531061
CI01000304_09494392_09503344.mRNA mRNA upstream 156120 9494392 ~ 9503588 (+) True CI01000304_09494392_09503344
CI01000304_09491577_09494024.mRNA mRNA upstream 165684 9491577 ~ 9494024 (+) True CI01000304_09491577_09494024
CI01000304_09683383_09690928.mRNA mRNA downstream 23225 9683383 ~ 9690941 (+) True CI01000304_09683383_09690928
CI01000304_09692774_09694613.mRNA mRNA downstream 32616 9692774 ~ 9694613 (+) True CI01000304_09692774_09694613
CI01000304_09695997_09696577.mRNA mRNA downstream 35839 9695997 ~ 9697143 (+) True CI01000304_09695997_09696577
CI01000304_09757695_09760278.mRNA mRNA downstream 96935 9757093 ~ 9760699 (+) True CI01000304_09757695_09760278
CI01000304_09879900_09938234.mRNA mRNA downstream 219696 9879854 ~ 9939321 (+) True CI01000304_09879900_09938234
TU486746 other upstream 94135 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU486477 other upstream 710286 8949036 ~ 8949422 (+) True G423614
TU486091 other upstream 987153 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU485809 other upstream 1424748 8234441 ~ 8234534 (+) True G423009
TU485573 other upstream 1678973 7978628 ~ 7978814 (+) True G422786
TU487178 other downstream 460241 10120399 ~ 10127322 (+) True G424246
TU487194 other downstream 528664 10188822 ~ 10189404 (+) False G424251
TU487195 other downstream 529157 10189315 ~ 10189404 (+) True G424251
TU487556 other downstream 895128 10555614 ~ 10555704 (+) True G424559
TU488854 other downstream 2768547 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019

Expression Profile