RNA id: TU487125


Basic Information

Item Value
RNA id TU487125
length 547
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G424200
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9671187 ~ 9671733 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACACACATGCAGACATTCAAGTTTCACACTAAGTAGAACAAGATTGATACATGTAAAAAATAATAAAAAAGCATACACTCAATTAAAAATCATCAAAATGACACCGAAACTAATATCTTCTAATTTTTCTCATCTACCTGTCCTTCTTTCTCACAAACCAATAACTCATTAATGAAAGTATTTCTAGTTGCTTAATGTGTAAAATTAGATCCTACCTGTCCTGTAGGTGACCTGTTTGGTGTGCATAGAAAAGGTCCCCAGTACTACACCCATCTTCATTAGAGTTCTTCACTTTTTCACTTTCCTCACTTCAGATCTTGGTTTGAAAAAAAATCACTATTCCCTGTTTTTGTATTTTATCTCCTGATCTCTTTTGCTCTCAGAGTTGCTGGTTACTAGCTCTCGCTGTCTCTGACTTTCCTCCGCGTTCTGTCTGTCTATCATGTGGACTCTGAAGGCTGCTCATCATTTCCTGAGCTTTTATGGGGCTGAGAGAGAGGAGGGGGATGAGGAGAGGATGAGAGATGGTGAGTGGTTCATATAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU487124 lncRNA downstream 2210 9668750 ~ 9668977 (-) True G424199
TU487122 lncRNA downstream 10170 9660595 ~ 9661017 (-) True G424197
TU487121 lncRNA downstream 10862 9659583 ~ 9660325 (-) True G424196
TU487079 lncRNA downstream 11900 9658330 ~ 9659287 (-) True G424170
TU487115 lncRNA downstream 21310 9649661 ~ 9649877 (-) True G424190
TU487126 lncRNA upstream 11 9671744 ~ 9672047 (-) True G424201
TU487127 lncRNA upstream 3140 9674873 ~ 9675087 (-) True G424202
TU487133 lncRNA upstream 4396 9676129 ~ 9691240 (-) True G424203
TU487078 lncRNA upstream 22792 9694525 ~ 9695379 (-) True G424169
TU487064 lncRNA upstream 24000 9695733 ~ 9697323 (-) True G424159
CI01000304_09622805_09640521.mRNA mRNA downstream 30647 9622376 ~ 9640540 (-) True CI01000304_09622805_09640521
CI01000304_09609674_09619712.mRNA mRNA downstream 51157 9609510 ~ 9620030 (-) True CI01000304_09609674_09619712
CI01000304_09577749_09578512.mRNA mRNA downstream 92675 9576119 ~ 9578512 (-) True CI01000304_09577749_09578512
CI01000304_09566730_09575706.mRNA mRNA downstream 95481 9566730 ~ 9575706 (-) False CI01000304_09566730_09575706
CI01000304_09508090_09519201.mRNA mRNA downstream 151854 9507297 ~ 9519333 (-) True CI01000304_09508090_09519201
CI01000304_09699524_09703985.mRNA mRNA upstream 27635 9699368 ~ 9706659 (-) True CI01000304_09699524_09703985
CI01000304_09720695_09725068.mRNA mRNA upstream 48543 9720276 ~ 9725068 (-) True CI01000304_09720695_09725068
CI01000304_09726631_09727403.mRNA mRNA upstream 54214 9725947 ~ 9730308 (-) True CI01000304_09726631_09727403
CI01000304_09737662_09738777.mRNA mRNA upstream 65493 9737226 ~ 9738777 (-) False CI01000304_09737662_09738777
CI01000304_09751291_09754997.mRNA mRNA upstream 79188 9750921 ~ 9755245 (-) True CI01000304_09751291_09754997
TU487066 other downstream 102153 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU486232 other downstream 805891 8862223 ~ 8865296 (-) True G423386
TU485601 other downstream 2018484 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 2888141 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 3039688 6631086 ~ 6631499 (-) True G422354
TU487077 other upstream 65013 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 481713 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 482126 10153859 ~ 10164330 (-) True G424458
TU487433 other upstream 518841 10192696 ~ 10192895 (-) True G424459
TU487810 other upstream 772622 10444355 ~ 10542665 (-) True G424808

Expression Profile