RNA id: TU487127


Basic Information

Item Value
RNA id TU487127
length 215
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G424202
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9674873 ~ 9675087 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAACATAAGGTGCGTCCCAATTCATGTACTTATGCACTATTCTATGACGTTAAGTACAAATATTGTGAGTAATGCGTTCACACAGAAAATTCCAAAAAGAAAAAGTGCACTTTAAATACCTGGATGATGCACTAAATTAATGGAAAAAACAAAGTGTGGAATGTTGGACACTTCATGCACTCAGCTGTCGCAGCTTTAATTACGTTGGGGGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU487126 lncRNA downstream 2826 9671744 ~ 9672047 (-) True G424201
TU487125 lncRNA downstream 3140 9671187 ~ 9671733 (-) True G424200
TU487124 lncRNA downstream 5896 9668750 ~ 9668977 (-) True G424199
TU487122 lncRNA downstream 13856 9660595 ~ 9661017 (-) True G424197
TU487121 lncRNA downstream 14548 9659583 ~ 9660325 (-) True G424196
TU487133 lncRNA upstream 1042 9676129 ~ 9691240 (-) True G424203
TU487078 lncRNA upstream 19438 9694525 ~ 9695379 (-) True G424169
TU487064 lncRNA upstream 20646 9695733 ~ 9697323 (-) True G424159
TU487147 lncRNA upstream 68481 9743568 ~ 9744018 (-) True G424217
TU487148 lncRNA upstream 69118 9744205 ~ 9744618 (-) True G424218
CI01000304_09622805_09640521.mRNA mRNA downstream 34333 9622376 ~ 9640540 (-) True CI01000304_09622805_09640521
CI01000304_09609674_09619712.mRNA mRNA downstream 54843 9609510 ~ 9620030 (-) True CI01000304_09609674_09619712
CI01000304_09577749_09578512.mRNA mRNA downstream 96361 9576119 ~ 9578512 (-) True CI01000304_09577749_09578512
CI01000304_09566730_09575706.mRNA mRNA downstream 99167 9566730 ~ 9575706 (-) False CI01000304_09566730_09575706
CI01000304_09508090_09519201.mRNA mRNA downstream 155540 9507297 ~ 9519333 (-) True CI01000304_09508090_09519201
CI01000304_09699524_09703985.mRNA mRNA upstream 24281 9699368 ~ 9706659 (-) True CI01000304_09699524_09703985
CI01000304_09720695_09725068.mRNA mRNA upstream 45189 9720276 ~ 9725068 (-) True CI01000304_09720695_09725068
CI01000304_09726631_09727403.mRNA mRNA upstream 50860 9725947 ~ 9730308 (-) True CI01000304_09726631_09727403
CI01000304_09737662_09738777.mRNA mRNA upstream 62139 9737226 ~ 9738777 (-) False CI01000304_09737662_09738777
CI01000304_09751291_09754997.mRNA mRNA upstream 75834 9750921 ~ 9755245 (-) True CI01000304_09751291_09754997
TU487066 other downstream 105839 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU486232 other downstream 809577 8862223 ~ 8865296 (-) True G423386
TU485601 other downstream 2022170 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 2891827 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 3043374 6631086 ~ 6631499 (-) True G422354
TU487077 other upstream 61659 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 478359 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 478772 10153859 ~ 10164330 (-) True G424458
TU487433 other upstream 515487 10192696 ~ 10192895 (-) True G424459
TU487810 other upstream 769268 10444355 ~ 10542665 (-) True G424808

Expression Profile