RNA id: TU487064


Basic Information

Item Value
RNA id TU487064
length 1447
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G424159
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9695733 ~ 9697323 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGGTTTAAACCTGAAATATAAACTTTATTTGCATTTAAACAGATTCAAGGAAGTCAAAAAAGGTGAACAAGAGAACCGCATCTGAACCGTATTCATAGATTGAGTCCTGATTCTGTTGAGATTTAGCTGCACAGATTGTGACATGAACTAAAATATACATTGTTGGCATTTGGATTTATTACAGTTGACTAATCAAACCCAAACACTTAATACATTCCACCTTCTAGCATGTTACAGGGTATGGACAATTACAAAAATAACACACTGCTGAAATAATGTTATTCATCATTGATACCATTCTGAAACCCACTAATGCATCGCAAACCAAGTCAAGCGTTTCAAGATTTCAATAAATCAACTTCTCAGTCGCATCTCTAATCAGAATACAATGCACATATTTCCATGTCATTTTAAAATCATGGACGGGTACAGTCAACAAATCTCCATATAAATTAGAAGGTTGAAATCTTCTGCTCAGAAAGTCATTTGAGCAACAAGGCTGCCAAATGAAGGCCACACTCTATGGACATGACAACACCACAGGGGTGAGGAGAGGGCAGATTGCAAAGGATGAAAAAGGTCATGTTCTGAGTAAAGTCTATTCAAGGAATGGCACGGATTTGACATAAAAACTGAAGGGTATGGGGACAAACAAACATAAAATTGTGGGTAACAAAAACTAAAATCTTGGGCAAGAAAAAAAGGCTTAATAATTTAAGCAAAATAAAAAAGTGTTTCAGTTCTTCTACTTGACACTCTGTCTCCACTTCCAGAGCTCCTCAATGACCTTGCATCAGTGGCCTTGAAGCAGTTCTTCACATAGTTCTCAAACTTTGGCTGTAGTTTTGGTAGCGATACACCCTACAAAAACAAAAACAAACATGTTGAAAGTGATGTCTTCAGGTATGATTATTTTGGCAAGAATATTATGCATCAACTACACTGTATCCCATCATCAAGGTATGGAATGGTAATGGTTTCTTACCACACACACATTAACTCATTGTGACTTATGCAGAGAGGATGCAAAGGAAAACACACCTTTTCTACACTTGCCATCATCTTGGCCTTGATCTCTGGGACAGTGAAAACCCGTGGTGTCTGTGGCGTTTTAGGTGACTGTGGTGTTTTAGGCGTCTGTGCTTTCTTGTCACCCTTGTTGCCCTTTTCTGGAGTCTTGTTCTGTGAGAGCAAAATATCAAATCAGTAAGGCTAGAGAGACTTCAGCAAATGCTGCAACTCAAGAGTGGACAATTTTCTTTCAGGAGAAAGAGATGTTAACCTGTTTAGCAGGTGTACTGGGCTTGGGTCCTTTTCCATTCTGTGCAGGGGTCTGTGGTTTGGATGCAGTCTTCTTTTCCTGACAGAACAATAGGGGAAATATGAAATAAGCATTTCTGATTACACTTTTACACATCCTACAAAACTTAAAGGATTAGTTCACCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU487078 lncRNA downstream 354 9694525 ~ 9695379 (-) True G424169
TU487133 lncRNA downstream 4493 9676129 ~ 9691240 (-) True G424203
TU487127 lncRNA downstream 20646 9674873 ~ 9675087 (-) True G424202
TU487126 lncRNA downstream 23686 9671744 ~ 9672047 (-) True G424201
TU487125 lncRNA downstream 24000 9671187 ~ 9671733 (-) True G424200
TU487147 lncRNA upstream 46245 9743568 ~ 9744018 (-) True G424217
TU487148 lncRNA upstream 46882 9744205 ~ 9744618 (-) True G424218
TU487170 lncRNA upstream 142784 9840107 ~ 9840527 (-) True G424239
TU487386 lncRNA upstream 279936 9977259 ~ 9977486 (-) True G424418
TU487416 lncRNA upstream 336271 10033594 ~ 10036068 (-) True G424448
CI01000304_09622805_09640521.mRNA mRNA downstream 55193 9622376 ~ 9640540 (-) True CI01000304_09622805_09640521
CI01000304_09609674_09619712.mRNA mRNA downstream 75703 9609510 ~ 9620030 (-) True CI01000304_09609674_09619712
CI01000304_09577749_09578512.mRNA mRNA downstream 117221 9576119 ~ 9578512 (-) True CI01000304_09577749_09578512
CI01000304_09566730_09575706.mRNA mRNA downstream 120027 9566730 ~ 9575706 (-) False CI01000304_09566730_09575706
CI01000304_09508090_09519201.mRNA mRNA downstream 176400 9507297 ~ 9519333 (-) True CI01000304_09508090_09519201
CI01000304_09699524_09703985.mRNA mRNA upstream 2045 9699368 ~ 9706659 (-) True CI01000304_09699524_09703985
CI01000304_09720695_09725068.mRNA mRNA upstream 22953 9720276 ~ 9725068 (-) True CI01000304_09720695_09725068
CI01000304_09726631_09727403.mRNA mRNA upstream 28624 9725947 ~ 9730308 (-) True CI01000304_09726631_09727403
CI01000304_09737662_09738777.mRNA mRNA upstream 39903 9737226 ~ 9738777 (-) False CI01000304_09737662_09738777
CI01000304_09751291_09754997.mRNA mRNA upstream 53598 9750921 ~ 9755245 (-) True CI01000304_09751291_09754997
TU487066 other downstream 126699 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU486232 other downstream 830437 8862223 ~ 8865296 (-) True G423386
TU485601 other downstream 2043030 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 2912687 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 3064234 6631086 ~ 6631499 (-) True G422354
TU487077 other upstream 39423 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 456123 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 456536 10153859 ~ 10164330 (-) True G424458
TU487433 other upstream 493251 10192696 ~ 10192895 (-) True G424459
TU487810 other upstream 747032 10444355 ~ 10542665 (-) True G424808

Expression Profile