RNA id: TU487147


Basic Information

Item Value
RNA id TU487147
length 451
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G424217
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9743568 ~ 9744018 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAGATGGCAAAGACATAAAAGGTGAGATACAGTTTATACTTGAGTTTTATCGTTTAGAAGAAAACTAATACAACTACAGTCATAGCTAAGCTTATATACTAGGGATAAATACATGCACCTTTAAATACAGCGACGGGTACATATTGGCACAGTCATATTTGGAGGATAAATGTACATTCACAATCTCCATGCGTGTTTGTGAGTGTCTGTATGTGTGTGTGTATTGGGGTTGTGGCCAGTGTCTGTGACCATATCACCTTTAGTCCCACCAGGGTGACTCTTTGAAGTCTCTGGGGCTGGTGAGAATGTGTTCTGTTTTTCTTTACTGGGGTAACAAAGGTGCCAATGGGGCAATTGGTCCCGGACTTGCCGGAGCCGATTCGTGATTTACATGCACAGTTCAGGAGGCTAAAAGCATTCTGAAGATTCTAACTTGACGGGCAGATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU487064 lncRNA downstream 46245 9695733 ~ 9697323 (-) True G424159
TU487078 lncRNA downstream 48189 9694525 ~ 9695379 (-) True G424169
TU487133 lncRNA downstream 52328 9676129 ~ 9691240 (-) True G424203
TU487127 lncRNA downstream 68481 9674873 ~ 9675087 (-) True G424202
TU487126 lncRNA downstream 71521 9671744 ~ 9672047 (-) True G424201
TU487148 lncRNA upstream 187 9744205 ~ 9744618 (-) True G424218
TU487170 lncRNA upstream 96089 9840107 ~ 9840527 (-) True G424239
TU487386 lncRNA upstream 233241 9977259 ~ 9977486 (-) True G424418
TU487416 lncRNA upstream 289576 10033594 ~ 10036068 (-) True G424448
TU487459 lncRNA upstream 318247 10062265 ~ 10062752 (-) True G424482
CI01000304_09737662_09738777.mRNA mRNA downstream 4791 9737226 ~ 9738777 (-) False CI01000304_09737662_09738777
CI01000304_09726631_09727403.mRNA mRNA downstream 13260 9725947 ~ 9730308 (-) True CI01000304_09726631_09727403
CI01000304_09720695_09725068.mRNA mRNA downstream 18500 9720276 ~ 9725068 (-) True CI01000304_09720695_09725068
CI01000304_09699524_09703985.mRNA mRNA downstream 36909 9699368 ~ 9706659 (-) True CI01000304_09699524_09703985
CI01000304_09622805_09640521.mRNA mRNA downstream 103028 9622376 ~ 9640540 (-) True CI01000304_09622805_09640521
CI01000304_09751291_09754997.mRNA mRNA upstream 6903 9750921 ~ 9755245 (-) True CI01000304_09751291_09754997
CI01000304_09765626_09814386.mRNA mRNA upstream 21608 9765626 ~ 9814386 (-) True CI01000304_09765626_09814386
CI01000304_09944778_09945833.mRNA mRNA upstream 200605 9944623 ~ 9945833 (-) True CI01000304_09944778_09945833
CI01000304_09949821_09951564.mRNA mRNA upstream 205147 9949165 ~ 9953257 (-) True CI01000304_09949821_09951564
CI01000304_09955649_09957311.mRNA mRNA upstream 211536 9955554 ~ 9959307 (-) True CI01000304_09955649_09957311
TU487077 other downstream 4097 9739353 ~ 9739471 (-) True G424168
TU487066 other downstream 174534 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU486232 other downstream 878272 8862223 ~ 8865296 (-) True G423386
TU485601 other downstream 2090865 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 2960522 6744679 ~ 6783046 (-) True G422378
TU487428 other upstream 409428 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 409841 10153859 ~ 10164330 (-) True G424458
TU487433 other upstream 446556 10192696 ~ 10192895 (-) True G424459
TU487810 other upstream 700337 10444355 ~ 10542665 (-) True G424808
TU488239 other upstream 1603002 11354883 ~ 11357146 (-) False G425194

Expression Profile