RNA id: TU487148


Basic Information

Item Value
RNA id TU487148
length 414
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G424218
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9744205 ~ 9744618 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATCATAAAGCTTTATGATTAATTATAATACATATACCGACCCGAGAGGGAATTATACATATATTGTGAATTAATTACAACGAATTATAATCAATCACATATATGATTAGTTCTGGTTTGATAATAATTTAGAGAAACTATTAGTTTGTCCAGCAAACCGTTAGCTCCTCATAGCCGATTATAAAAGGAAGGTTTTTCTCTGGCCACGAGAAAGACTTCCTATTCTAGCATCAATGCGTAAAGCAAGGATACTGGATCGAAACGTTAAAGTGACCTGGGTTTGTTGCATGAGCAAAAAAACAATCGAGCATGAATATAATGTATTTAATATATGAAACTACGGATACAGAGACTATACTACTAGACATACACAAACAATACACATATATGGAAAACGAAAGTAAAGTCAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU487147 lncRNA downstream 187 9743568 ~ 9744018 (-) True G424217
TU487064 lncRNA downstream 46882 9695733 ~ 9697323 (-) True G424159
TU487078 lncRNA downstream 48826 9694525 ~ 9695379 (-) True G424169
TU487133 lncRNA downstream 52965 9676129 ~ 9691240 (-) True G424203
TU487127 lncRNA downstream 69118 9674873 ~ 9675087 (-) True G424202
TU487170 lncRNA upstream 95489 9840107 ~ 9840527 (-) True G424239
TU487386 lncRNA upstream 232641 9977259 ~ 9977486 (-) True G424418
TU487416 lncRNA upstream 288976 10033594 ~ 10036068 (-) True G424448
TU487459 lncRNA upstream 317647 10062265 ~ 10062752 (-) True G424482
TU487451 lncRNA upstream 337780 10082398 ~ 10090227 (-) True G424474
CI01000304_09737662_09738777.mRNA mRNA downstream 5428 9737226 ~ 9738777 (-) False CI01000304_09737662_09738777
CI01000304_09726631_09727403.mRNA mRNA downstream 13897 9725947 ~ 9730308 (-) True CI01000304_09726631_09727403
CI01000304_09720695_09725068.mRNA mRNA downstream 19137 9720276 ~ 9725068 (-) True CI01000304_09720695_09725068
CI01000304_09699524_09703985.mRNA mRNA downstream 37546 9699368 ~ 9706659 (-) True CI01000304_09699524_09703985
CI01000304_09622805_09640521.mRNA mRNA downstream 103665 9622376 ~ 9640540 (-) True CI01000304_09622805_09640521
CI01000304_09751291_09754997.mRNA mRNA upstream 6303 9750921 ~ 9755245 (-) True CI01000304_09751291_09754997
CI01000304_09765626_09814386.mRNA mRNA upstream 21008 9765626 ~ 9814386 (-) True CI01000304_09765626_09814386
CI01000304_09944778_09945833.mRNA mRNA upstream 200005 9944623 ~ 9945833 (-) True CI01000304_09944778_09945833
CI01000304_09949821_09951564.mRNA mRNA upstream 204547 9949165 ~ 9953257 (-) True CI01000304_09949821_09951564
CI01000304_09955649_09957311.mRNA mRNA upstream 210936 9955554 ~ 9959307 (-) True CI01000304_09955649_09957311
TU487077 other downstream 4734 9739353 ~ 9739471 (-) True G424168
TU487066 other downstream 175171 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU486232 other downstream 878909 8862223 ~ 8865296 (-) True G423386
TU485601 other downstream 2091502 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 2961159 6744679 ~ 6783046 (-) True G422378
TU487428 other upstream 408828 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 409241 10153859 ~ 10164330 (-) True G424458
TU487433 other upstream 445956 10192696 ~ 10192895 (-) True G424459
TU487810 other upstream 699737 10444355 ~ 10542665 (-) True G424808
TU488239 other upstream 1602402 11354883 ~ 11357146 (-) False G425194

Expression Profile