RNA id: TU487386


Basic Information

Item Value
RNA id TU487386
length 228
lncRNA type intronic
GC content 0.42
exon number 1
gene id G424418
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9977259 ~ 9977486 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGCTGTTTTGTCCAACTGCCTCAACCATAGTCAAATAACTCGAGGCGTATCAGGAGAGGGGTTGTGTACTTAAACCTTATGCCCCGTGTCTGATCTAAAAACTGTCCTAAGCGGTACAAAAGGGTGATGCTGGGTTTCTTTGAATCAAATGGTGGAATTAGGTTTACGCGGTGTAAAGATTCAGAAGAACCTAGAATTTTCTCCTAAAGCTAACAAATGACTAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU487170 lncRNA downstream 136732 9840107 ~ 9840527 (-) True G424239
TU487148 lncRNA downstream 232641 9744205 ~ 9744618 (-) True G424218
TU487147 lncRNA downstream 233241 9743568 ~ 9744018 (-) True G424217
TU487064 lncRNA downstream 279936 9695733 ~ 9697323 (-) True G424159
TU487078 lncRNA downstream 281880 9694525 ~ 9695379 (-) True G424169
TU487416 lncRNA upstream 56108 10033594 ~ 10036068 (-) True G424448
TU487459 lncRNA upstream 84779 10062265 ~ 10062752 (-) True G424482
TU487451 lncRNA upstream 104912 10082398 ~ 10090227 (-) True G424474
TU487473 lncRNA upstream 182162 10159648 ~ 10160361 (-) True G424496
TU487481 lncRNA upstream 196113 10173599 ~ 10174147 (-) False G424504
CI01000304_09955649_09957311.mRNA mRNA downstream 17952 9955554 ~ 9959307 (-) True CI01000304_09955649_09957311
CI01000304_09949821_09951564.mRNA mRNA downstream 24002 9949165 ~ 9953257 (-) True CI01000304_09949821_09951564
CI01000304_09944778_09945833.mRNA mRNA downstream 31426 9944623 ~ 9945833 (-) True CI01000304_09944778_09945833
CI01000304_09765626_09814386.mRNA mRNA downstream 162873 9765626 ~ 9814386 (-) True CI01000304_09765626_09814386
CI01000304_09751291_09754997.mRNA mRNA downstream 222014 9750921 ~ 9755245 (-) True CI01000304_09751291_09754997
CI01000304_10119297_10119833.mRNA mRNA upstream 141404 10118890 ~ 10119833 (-) True CI01000304_10119297_10119833
CI01000304_10123588_10128249.mRNA mRNA upstream 145921 10123407 ~ 10128249 (-) True CI01000304_10123588_10128249
CI01000304_10137324_10147067.mRNA mRNA upstream 159554 10137040 ~ 10149531 (-) True CI01000304_10137324_10147067
CI01000304_10160458_10161768.mRNA mRNA upstream 182972 10160458 ~ 10163762 (-) False CI01000304_10160458_10161768
CI01000304_10167646_10169639.mRNA mRNA upstream 188701 10166187 ~ 10169639 (-) True CI01000304_10167646_10169639
TU487077 other downstream 237788 9739353 ~ 9739471 (-) True G424168
TU487066 other downstream 408225 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU486232 other downstream 1111963 8862223 ~ 8865296 (-) True G423386
TU485601 other downstream 2324556 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 3194213 6744679 ~ 6783046 (-) True G422378
TU487428 other upstream 175960 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 176373 10153859 ~ 10164330 (-) True G424458
TU487433 other upstream 213088 10192696 ~ 10192895 (-) True G424459
TU487810 other upstream 466869 10444355 ~ 10542665 (-) True G424808
TU488239 other upstream 1369534 11354883 ~ 11357146 (-) False G425194

Expression Profile