RNA id: TU487416


Basic Information

Item Value
RNA id TU487416
length 527
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G424448
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 10033594 ~ 10036068 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTCATTCATGTTTGGTTGAGCTTCTGTGTATGTTCGCTGATCAATAGTCAAAGTTCAAGTTGTGAAGGCAGTCTATGGAGGGACAGAACACTGTCAGATTTCATCAAAAAGATCTTCATGTGTTCCGAAGATGAACAAAAGTCTTATGGGTTTGGAACGACATGAGGATGGCCCCGATGAACGCACGCACACTTACACACGCACACAGGTTTCCATGTTTTATGGGGACTTCCCAATGACGTAATGATTTTTTTAATACTGTACAAATTGTATATTCTATCCCCCTACAACCCTACCCCTAAACTTACCCATCACAGAAAACTTTCTGCATTTTTAGCTTTTCAAGACACTTAATTAAGTATGATTTAGAAGCTGTTTTCCTCATGGGGACCAAGAAAAAAAAAGTCCTCATAAGGTCAAAATTTACTGGTATTACTATCCTTGTGGGGACATTTGGTCCCCATAACATAGGGAATACCAGGTACACACTTACACATACACACTCACACACACAGAGAGAAAGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU487386 lncRNA downstream 56108 9977259 ~ 9977486 (-) True G424418
TU487170 lncRNA downstream 193067 9840107 ~ 9840527 (-) True G424239
TU487148 lncRNA downstream 288976 9744205 ~ 9744618 (-) True G424218
TU487147 lncRNA downstream 289576 9743568 ~ 9744018 (-) True G424217
TU487064 lncRNA downstream 336271 9695733 ~ 9697323 (-) True G424159
TU487459 lncRNA upstream 26197 10062265 ~ 10062752 (-) True G424482
TU487451 lncRNA upstream 46330 10082398 ~ 10090227 (-) True G424474
TU487473 lncRNA upstream 123580 10159648 ~ 10160361 (-) True G424496
TU487481 lncRNA upstream 137531 10173599 ~ 10174147 (-) False G424504
TU487482 lncRNA upstream 137531 10173599 ~ 10173855 (-) True G424504
CI01000304_09955649_09957311.mRNA mRNA downstream 74287 9955554 ~ 9959307 (-) True CI01000304_09955649_09957311
CI01000304_09949821_09951564.mRNA mRNA downstream 80337 9949165 ~ 9953257 (-) True CI01000304_09949821_09951564
CI01000304_09944778_09945833.mRNA mRNA downstream 87761 9944623 ~ 9945833 (-) True CI01000304_09944778_09945833
CI01000304_09765626_09814386.mRNA mRNA downstream 219208 9765626 ~ 9814386 (-) True CI01000304_09765626_09814386
CI01000304_09751291_09754997.mRNA mRNA downstream 278349 9750921 ~ 9755245 (-) True CI01000304_09751291_09754997
CI01000304_10119297_10119833.mRNA mRNA upstream 82822 10118890 ~ 10119833 (-) True CI01000304_10119297_10119833
CI01000304_10123588_10128249.mRNA mRNA upstream 87339 10123407 ~ 10128249 (-) True CI01000304_10123588_10128249
CI01000304_10137324_10147067.mRNA mRNA upstream 100972 10137040 ~ 10149531 (-) True CI01000304_10137324_10147067
CI01000304_10160458_10161768.mRNA mRNA upstream 124390 10160458 ~ 10163762 (-) False CI01000304_10160458_10161768
CI01000304_10167646_10169639.mRNA mRNA upstream 130119 10166187 ~ 10169639 (-) True CI01000304_10167646_10169639
TU487077 other downstream 294123 9739353 ~ 9739471 (-) True G424168
TU487066 other downstream 464560 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU486232 other downstream 1168298 8862223 ~ 8865296 (-) True G423386
TU485601 other downstream 2380891 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 3250548 6744679 ~ 6783046 (-) True G422378
TU487428 other upstream 117378 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 117791 10153859 ~ 10164330 (-) True G424458
TU487433 other upstream 154506 10192696 ~ 10192895 (-) True G424459
TU487810 other upstream 408287 10444355 ~ 10542665 (-) True G424808
TU488239 other upstream 1310952 11354883 ~ 11357146 (-) False G425194

Expression Profile