RNA id: TU487293


Basic Information

Item Value
RNA id TU487293
length 315
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G424336
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 10152227 ~ 10152541 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCCCCTGGATCTCGTGTGTTCTGCAGCGAGGGGCTACTGAATGTTTGAGTTTCTGCACATACGTCATTATGCGACAGGAAGCTTGCGCTCCAGACTGCCGTTAACACGCTCGGGACCGTTTGTAGAGGCTTTGGATTAAAGGTAATAATGCTGTAAATAATGTTCAGTTTCTTGCACAGACCGATCGCTTCGCTTCATAAGACCTCAGTGTATCGTCAGGAGCCACAGGTGTTCATTTTGTTTCGCCTGTATATGTTTTTTTGACTCTCAAAGTGACGGTAACCATTTGACTTGCATTATATGAATCACCAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU487290 lncRNA upstream 2229 10148454 ~ 10149998 (+) True G424334
TU487211 lncRNA upstream 14586 10135492 ~ 10137641 (+) True G424257
TU487179 lncRNA upstream 30783 10116343 ~ 10121444 (+) False G424246
TU487181 lncRNA upstream 31992 10116343 ~ 10120235 (+) False G424246
TU487233 lncRNA upstream 36546 10115334 ~ 10115681 (+) True G424277
TU487294 lncRNA downstream 643 10153184 ~ 10153404 (+) True G424337
TU487188 lncRNA downstream 903 10153444 ~ 10216855 (+) True G424248
TU487310 lncRNA downstream 66579 10219120 ~ 10221115 (+) True G424351
TU487325 lncRNA downstream 90438 10242979 ~ 10243213 (+) True G424366
TU487340 lncRNA downstream 100506 10253047 ~ 10253272 (+) True G424376
CI01000304_10112119_10114490.mRNA mRNA upstream 37401 10109978 ~ 10114826 (+) True CI01000304_10112119_10114490
CI01000304_10093597_10099497.mRNA mRNA upstream 52730 10093597 ~ 10099497 (+) True CI01000304_10093597_10099497
CI01000304_09976509_10020020.mRNA mRNA upstream 131652 9976509 ~ 10020575 (+) True CI01000304_09976509_10020020
CI01000304_09961620_09975855.mRNA mRNA upstream 176357 9961620 ~ 9975870 (+) True CI01000304_09961620_09975855
CI01000304_09879900_09938234.mRNA mRNA upstream 212906 9879854 ~ 9939321 (+) True CI01000304_09879900_09938234
CI01000304_10172353_10175399.mRNA mRNA downstream 19812 10172353 ~ 10175694 (+) True CI01000304_10172353_10175399
CI01000304_10177319_10186557.mRNA mRNA downstream 24778 10177319 ~ 10186665 (+) True CI01000304_10177319_10186557
CI01000304_10189588_10190707.mRNA mRNA downstream 37047 10189588 ~ 10190977 (+) False CI01000304_10189588_10190707
CI01000304_10192819_10195110.mRNA mRNA downstream 40215 10192756 ~ 10195110 (+) False CI01000304_10192819_10195110
CI01000304_10256417_10260924.mRNA mRNA downstream 103682 10256223 ~ 10260924 (+) True CI01000304_10256417_10260924
TU487178 other upstream 24905 10120399 ~ 10127322 (+) True G424246
TU486746 other upstream 586654 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU486477 other upstream 1202805 8949036 ~ 8949422 (+) True G423614
TU486091 other upstream 1479672 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU485809 other upstream 1917267 8234441 ~ 8234534 (+) True G423009
TU487194 other downstream 36281 10188822 ~ 10189404 (+) False G424251
TU487195 other downstream 36774 10189315 ~ 10189404 (+) True G424251
TU487556 other downstream 402745 10555614 ~ 10555704 (+) True G424559
TU488854 other downstream 2276164 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other downstream 2276164 12436554 ~ 12436605 (+) True G425718

Expression Profile