RNA id: TCONS_00019718


Basic Information

Item Value
RNA id TCONS_00019718
length 452
RNA type processed_transcript
GC content 0.44
exon number 3
gene id XLOC_009882
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23397785 ~ 23399484 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGCAGGACATTCACATCATTCCTTCATCTTCAGGTGACGCTCTGCCTTTATCAGCGCGCAGAGGGGAACTCATCAACCCTGAGTCGAAGAGAGCTTAAACAGCTGATGGAGAAAGAGCTGGCTAGTTTTCTGAAGAGTCAGAAAGACCCTGCTGCCGTAGACAAGATTATGAAGGATCTGGATGCCAATGGGGATGGAGAGGTGAATTTTGAGGAGTTTGTGTCTCTTGTGGTGGGCCTGTCCATCGCCTGCGAACAACTCTACCAGAAACAGATGAAAGCAGCAGCCAAGAAGTAATAAAAGACCAAACatgaggggaaaaaaagtttttctgtTTTGTCACATTGTTAATAGTTTAATACACACTTTCATCCGCATGCCCCAATTGGAAGTTGCAACTGCAGTTACAATGCATTTTTGCAAATGAGgatgttttgtcatttttgtcaaG

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0005615 extracellular space cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1937 Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to be active in cytoplasm and extracellular space. Is expressed in several structures, including digestive system; ectoderm; hematopoietic system; lens; and solid lens vesicle. Orthologous to several human genes including S100A10 (S100 calcium binding protein A10).

Ensembl:

ensembl_id ENSDART00000149053

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019712 lncRNA upstream 100595 23294686 ~ 23297206 (+) True XLOC_009879
TCONS_00019708 lncRNA upstream 521706 22872860 ~ 22876095 (+) True XLOC_009877
TCONS_00021928 lncRNA upstream 701305 22695226 ~ 22696496 (+) True XLOC_009875
TCONS_00021927 lncRNA upstream 742714 22649863 ~ 22655087 (+) False XLOC_009874
TCONS_00021710 lncRNA upstream 818475 22575355 ~ 22579326 (+) True XLOC_009872
TCONS_00021929 lncRNA downstream 412441 23811601 ~ 23821746 (+) False XLOC_009891
TCONS_00019740 lncRNA downstream 514922 23914082 ~ 23915127 (+) True XLOC_009894
TCONS_00019749 lncRNA downstream 548129 23947289 ~ 23948093 (+) True XLOC_009897
TCONS_00019752 lncRNA downstream 561749 23960909 ~ 23962471 (+) False XLOC_009898
TCONS_00019763 lncRNA downstream 580220 23979380 ~ 23980174 (+) True XLOC_009900
TCONS_00019714 mRNA upstream 5535 23326085 ~ 23392266 (+) False XLOC_009881
TCONS_00019715 mRNA upstream 5535 23331633 ~ 23392266 (+) False XLOC_009881
TCONS_00019716 mRNA upstream 9182 23383316 ~ 23388619 (+) True XLOC_009881
TCONS_00019713 mRNA upstream 82923 23303859 ~ 23314878 (+) True XLOC_009880
TCONS_00019711 mRNA upstream 99652 23282655 ~ 23298149 (+) False XLOC_009879
TCONS_00019720 mRNA downstream 4442 23403602 ~ 23405346 (+) False XLOC_009883
TCONS_00019721 mRNA downstream 5010 23404170 ~ 23406155 (+) True XLOC_009883
TCONS_00019722 mRNA downstream 32029 23431189 ~ 23432552 (+) True XLOC_009884
TCONS_00019723 mRNA downstream 87891 23487051 ~ 23491093 (+) True XLOC_009885
TCONS_00019724 mRNA downstream 96440 23495600 ~ 23524374 (+) True XLOC_009886
TCONS_00019682 other upstream 1694122 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019667 other upstream 2484317 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019658 other upstream 2892936 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019655 other upstream 3093526 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019651 other upstream 3226973 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019728 other downstream 208071 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019735 other downstream 438760 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019751 other downstream 561711 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019767 other downstream 1116932 24516092 ~ 24517092 (+) False XLOC_009904
TCONS_00019777 other downstream 1481962 24881122 ~ 24881218 (+) True XLOC_009911

Expression Profile

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