RNA id: TU487834


Basic Information

Item Value
RNA id TU487834
length 302
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G424831
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 10318730 ~ 10319031 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCAAATTATTTATTTCGTTCACACCATATGGGCTGTGAATTTAGGGCCCAGTCCCTGAGGTTTAGACTTTAGATGCTTGACAGCACAGCCATGTGAGAACCGTGTCTGCCACTGACAACACACAACTAAAGAAAGCACAATGTGATCAGATGGTCCAGACCTCATCACTTCAGCCACGAGAGACGTGAAACATTAGCTGCAAAACCATGAATTCTCATAGCAGCTGATACCCTGCTAGGCAGGAAGTGACTAGAGTTGATGTGCTAGTGTCAACTGTAAATCAATGCAGAAGAGCGACTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU487833 lncRNA downstream 637 10317611 ~ 10318093 (-) True G424830
TU487832 lncRNA downstream 1199 10317302 ~ 10317531 (-) True G424829
TU487826 lncRNA downstream 46319 10271923 ~ 10272411 (-) True G424823
TU487796 lncRNA downstream 56390 10262071 ~ 10262340 (-) True G424797
TU487516 lncRNA downstream 66268 10252221 ~ 10252462 (-) True G424535
TU487819 lncRNA upstream 114149 10433180 ~ 10491120 (-) True G424817
TU487815 lncRNA upstream 133430 10452461 ~ 10564732 (-) True G424813
TU487812 lncRNA upstream 228649 10547680 ~ 10561382 (-) True G424810
TU487808 lncRNA upstream 246597 10565628 ~ 10580012 (-) True G424806
TU487800 lncRNA upstream 274553 10593584 ~ 10596842 (-) True G424799
CI01000304_10284509_10291314.mRNA mRNA downstream 27416 10284509 ~ 10291314 (-) True CI01000304_10284509_10291314
CI01000304_10220812_10226103.mRNA mRNA downstream 92627 10219589 ~ 10226103 (-) True CI01000304_10220812_10226103
CI01000304_10209150_10210418.mRNA mRNA downstream 107839 10208635 ~ 10210891 (-) True CI01000304_10209150_10210418
CI01000304_10191594_10192287.mRNA mRNA downstream 126373 10191398 ~ 10192357 (-) False CI01000304_10191594_10192287
CI01000304_10187728_10188909.mRNA mRNA downstream 129821 10187271 ~ 10188909 (-) True CI01000304_10187728_10188909
CI01000304_10350748_10388571.mRNA mRNA upstream 30838 10349869 ~ 10388602 (-) True CI01000304_10350748_10388571
CI01000304_10812673_10812980.mRNA mRNA upstream 493502 10812533 ~ 10815238 (-) False CI01000304_10812673_10812980
CI01000304_11065581_11077156.mRNA mRNA upstream 746208 11065239 ~ 11077156 (-) True CI01000304_11065581_11077156
CI01000304_11083948_11091592.mRNA mRNA upstream 764807 11083838 ~ 11091592 (-) True CI01000304_11083948_11091592
CI01000304_11110559_11121354.mRNA mRNA upstream 791432 11110463 ~ 11122171 (-) True CI01000304_11110559_11121354
TU487433 other downstream 125835 10192696 ~ 10192895 (-) True G424459
TU487428 other downstream 154400 10153446 ~ 10164330 (-) False G424458
TU487429 other downstream 154400 10153859 ~ 10164330 (-) True G424458
TU487077 other downstream 579259 9739353 ~ 9739471 (-) True G424168
TU487066 other downstream 749696 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487810 other upstream 125324 10444355 ~ 10542665 (-) True G424808
TU488239 other upstream 1027989 11354883 ~ 11357146 (-) False G425194
TU488240 other upstream 1027989 11354883 ~ 11357146 (-) True G425194
TU488688 other upstream 1549646 11868677 ~ 11872906 (-) True G425580
TU489285 other upstream 2017670 12336701 ~ 12340228 (-) True G426106

Expression Profile