RNA id: TU487939


Basic Information

Item Value
RNA id TU487939
length 202
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G424932
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 10899107 ~ 10899901 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTGTTGTTTCACCTATCAATTTGTGTCGATAATGTATAATAGGGTAAATCCTGTATAGTGATTTATTCTATATAGTGCTTGCATAAAGCAAGTAGTGTACACAGTCGTAGCTGTTATGTATCTTTGTAACTCATTGTAAGTCCTCTTTTGAGGCATGCGCAAGCGCACGACAGTTTAACATCATAAAACGGATAGTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU487914 lncRNA downstream 49624 10849201 ~ 10849483 (-) True G424907
TU487820 lncRNA downstream 76458 10769715 ~ 10822649 (-) True G424818
TU487800 lncRNA downstream 85872 10593584 ~ 10596842 (-) True G424799
TU487899 lncRNA downstream 113850 10778756 ~ 10785257 (-) True G424892
TU487898 lncRNA downstream 175199 10713964 ~ 10723908 (-) True G424891
TU488143 lncRNA upstream 34480 10934381 ~ 11001594 (-) True G425104
TU488168 lncRNA upstream 237476 11137377 ~ 11137710 (-) True G425126
TU488209 lncRNA upstream 240013 11139914 ~ 11140117 (-) True G425167
TU488210 lncRNA upstream 241786 11141687 ~ 11141959 (-) True G425168
TU488232 lncRNA upstream 305721 11205622 ~ 11257296 (-) True G425188
CI01000304_10812673_10812980.mRNA mRNA downstream 83869 10812533 ~ 10815238 (-) False CI01000304_10812673_10812980
CI01000304_10350748_10388571.mRNA mRNA downstream 510505 10349869 ~ 10388602 (-) True CI01000304_10350748_10388571
CI01000304_10284509_10291314.mRNA mRNA downstream 607793 10284509 ~ 10291314 (-) True CI01000304_10284509_10291314
CI01000304_10220812_10226103.mRNA mRNA downstream 673004 10219589 ~ 10226103 (-) True CI01000304_10220812_10226103
CI01000304_10209150_10210418.mRNA mRNA downstream 688216 10208635 ~ 10210891 (-) True CI01000304_10209150_10210418
CI01000304_11065581_11077156.mRNA mRNA upstream 165338 11065239 ~ 11077156 (-) True CI01000304_11065581_11077156
CI01000304_11083948_11091592.mRNA mRNA upstream 183937 11083838 ~ 11091592 (-) True CI01000304_11083948_11091592
CI01000304_11110559_11121354.mRNA mRNA upstream 210562 11110463 ~ 11122171 (-) True CI01000304_11110559_11121354
CI01000304_11124801_11135838.mRNA mRNA upstream 224256 11124157 ~ 11137342 (-) True CI01000304_11124801_11135838
CI01000304_11272501_11275583.mRNA mRNA upstream 372323 11272224 ~ 11275583 (-) True CI01000304_11272501_11275583
TU487810 other downstream 356442 10444355 ~ 10542665 (-) True G424808
TU487433 other downstream 706212 10192696 ~ 10192895 (-) True G424459
TU487428 other downstream 734777 10153446 ~ 10164330 (-) False G424458
TU487429 other downstream 734777 10153859 ~ 10164330 (-) True G424458
TU487077 other downstream 1159636 9739353 ~ 9739471 (-) True G424168
TU488239 other upstream 447119 11354883 ~ 11357146 (-) False G425194
TU488240 other upstream 447119 11354883 ~ 11357146 (-) True G425194
TU488688 other upstream 968776 11868677 ~ 11872906 (-) True G425580
TU489285 other upstream 1436800 12336701 ~ 12340228 (-) True G426106
TU489325 other upstream 1658953 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998

Expression Profile