RNA id: TU488143


Basic Information

Item Value
RNA id TU488143
length 376
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G425104
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 10934381 ~ 11001594 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATATAGTTTGTAGCGTCTGGATAGATCCGGCTAGTCAATCAACGTTGGACATTTCAGAATGCTTTTAGCCTCCTGAACTGTGCATGTAAATCACGAATCGGCTCCGGCAAGTCCGGGACCAATTGCCCCATTGGCACCTTTGTTACCCCAGTAAAGAAAAACAGAACATATTCTCACCAGCTCCAGAGACTTCAAAGAGTCACCCTGGTGGGACTAAAGGTGATATGGTCACAGACACTGGCCACAACCCCAATACACACACACATACAGACACTCACAAACACGCATGGAGATTGTGAATGTACATTTATCCTCCAAATATGACTGTGCCAATATGTACCCGTCGCTGTATTTAAAGGTGCATGTATTTATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU487939 lncRNA downstream 34480 10899107 ~ 10899901 (-) True G424932
TU487914 lncRNA downstream 84898 10849201 ~ 10849483 (-) True G424907
TU487820 lncRNA downstream 111732 10769715 ~ 10822649 (-) True G424818
TU487800 lncRNA downstream 121146 10593584 ~ 10596842 (-) True G424799
TU488168 lncRNA upstream 135783 11137377 ~ 11137710 (-) True G425126
TU488209 lncRNA upstream 138320 11139914 ~ 11140117 (-) True G425167
TU488210 lncRNA upstream 140093 11141687 ~ 11141959 (-) True G425168
TU488232 lncRNA upstream 204028 11205622 ~ 11257296 (-) True G425188
TU488235 lncRNA upstream 204322 11205916 ~ 11251704 (-) True G425190
CI01000304_10812673_10812980.mRNA mRNA downstream 119143 10812533 ~ 10815238 (-) False CI01000304_10812673_10812980
CI01000304_10350748_10388571.mRNA mRNA downstream 545779 10349869 ~ 10388602 (-) True CI01000304_10350748_10388571
CI01000304_10284509_10291314.mRNA mRNA downstream 643067 10284509 ~ 10291314 (-) True CI01000304_10284509_10291314
CI01000304_10220812_10226103.mRNA mRNA downstream 708278 10219589 ~ 10226103 (-) True CI01000304_10220812_10226103
CI01000304_10209150_10210418.mRNA mRNA downstream 723490 10208635 ~ 10210891 (-) True CI01000304_10209150_10210418
CI01000304_11065581_11077156.mRNA mRNA upstream 63645 11065239 ~ 11077156 (-) True CI01000304_11065581_11077156
CI01000304_11083948_11091592.mRNA mRNA upstream 82244 11083838 ~ 11091592 (-) True CI01000304_11083948_11091592
CI01000304_11110559_11121354.mRNA mRNA upstream 108869 11110463 ~ 11122171 (-) True CI01000304_11110559_11121354
CI01000304_11124801_11135838.mRNA mRNA upstream 122563 11124157 ~ 11137342 (-) True CI01000304_11124801_11135838
CI01000304_11272501_11275583.mRNA mRNA upstream 270630 11272224 ~ 11275583 (-) True CI01000304_11272501_11275583
TU487810 other downstream 391716 10444355 ~ 10542665 (-) True G424808
TU487433 other downstream 741486 10192696 ~ 10192895 (-) True G424459
TU487428 other downstream 770051 10153446 ~ 10164330 (-) False G424458
TU487429 other downstream 770051 10153859 ~ 10164330 (-) True G424458
TU487077 other downstream 1194910 9739353 ~ 9739471 (-) True G424168
TU488239 other upstream 345426 11354883 ~ 11357146 (-) False G425194
TU488240 other upstream 345426 11354883 ~ 11357146 (-) True G425194
TU488688 other upstream 867083 11868677 ~ 11872906 (-) True G425580
TU489285 other upstream 1335107 12336701 ~ 12340228 (-) True G426106
TU489325 other upstream 1557260 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998

Expression Profile