RNA id: TU488103


Basic Information

Item Value
RNA id TU488103
length 320
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G425073
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11137389 ~ 11137708 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGAACACATCACTTTATTAGGCTGATGTCCATTTTTATTCGCATTACACAGTTGATGGAAACACACGCAGATGCGCATATTCTTGAGCTGAATTTTCATTAATGCAAAGTTGGATGGAAACCCGGCTATTGTCTGCATCAAACCATGCTTCCGAACAAATGTCATACACTTCTGCGCAGTGGCGTAGCGCAAATCCGCGGGGCCCCCCGCGAGCCGAAAGTCCGAGGCCACCCGAAGGAAGGTTCAACCAAGAAGGGGAGCCAATGGATATCACACAAGAAGCAACGTGCAAACTTTGCGGAAAAGTTATGCCGGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU488042 lncRNA upstream 15215 11116120 ~ 11122174 (+) True G425027
TU488088 lncRNA upstream 64657 11072329 ~ 11072732 (+) True G425058
TU488082 lncRNA upstream 65233 11066492 ~ 11072156 (+) True G425052
TU487943 lncRNA upstream 71832 11064518 ~ 11065557 (+) True G424936
TU487793 lncRNA upstream 286814 10850310 ~ 10850575 (+) True G424794
TU488078 lncRNA downstream 54477 11192185 ~ 11209025 (+) True G425048
TU488111 lncRNA downstream 142819 11280527 ~ 11280784 (+) False G425081
TU488112 lncRNA downstream 142819 11280527 ~ 11280867 (+) True G425081
TU488074 lncRNA downstream 143255 11280963 ~ 11281207 (+) True G425044
TU488117 lncRNA downstream 184223 11321931 ~ 11321987 (+) False G425085
CI01000304_11011297_11032025.mRNA mRNA upstream 105303 11009578 ~ 11032086 (+) True CI01000304_11011297_11032025
CI01000304_10927170_10992558.mRNA mRNA upstream 144831 10927170 ~ 10992558 (+) True CI01000304_10927170_10992558
CI01000304_10586097_10589143.mRNA mRNA upstream 547781 10585348 ~ 10589608 (+) True CI01000304_10586097_10589143
CI01000304_10577811_10579298.mRNA mRNA upstream 556852 10577701 ~ 10580537 (+) False CI01000304_10577811_10579298
CI01000304_10555326_10571933.mRNA mRNA upstream 565225 10555216 ~ 10572164 (+) False CI01000304_10555326_10571933
CI01000304_11140964_11155540.mRNA mRNA downstream 3256 11140964 ~ 11155892 (+) True CI01000304_11140964_11155540
CI01000304_11170412_11182604.mRNA mRNA downstream 32158 11169866 ~ 11182641 (+) True CI01000304_11170412_11182604
CI01000304_11215537_11253484.mRNA mRNA downstream 77229 11214937 ~ 11253581 (+) True CI01000304_11215537_11253484
CI01000304_11264394_11268134.mRNA mRNA downstream 126686 11264394 ~ 11268134 (+) True CI01000304_11264394_11268134
CI01000304_11288992_11297645.mRNA mRNA downstream 151284 11288992 ~ 11298149 (+) True CI01000304_11288992_11297645
TU487556 other upstream 581685 10555614 ~ 10555704 (+) True G424559
TU487195 other upstream 944494 10189315 ~ 10189404 (+) True G424251
TU487194 other upstream 945591 10188822 ~ 10189404 (+) False G424251
TU487178 other upstream 1010067 10120399 ~ 10127322 (+) True G424246
TU486746 other upstream 1571816 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU488854 other downstream 1290997 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other downstream 1290997 12436554 ~ 12436605 (+) True G425718
TU488852 other downstream 1300096 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU489575 other downstream 2418743 13556451 ~ 13573943 (+) True G426349
TU489538 other downstream 3192340 14330048 ~ 14330886 (+) True G426312

Expression Profile