RNA id: TU488210


Basic Information

Item Value
RNA id TU488210
length 273
lncRNA type intronic
GC content 0.48
exon number 1
gene id G425168
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11141687 ~ 11141959 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAAAATATCAGCCTCATCGTCACCCTTTCTCTTCCTGCCGATGCTCTTATAAGACACTGATATGCCCACCCAACAATTCCCGCTCCAGTCAGCCTCCCAGTAGGCACGTCCACACACACTCTCTCTACACAACACCTGAGGACTGCCATCAAACCTGTCTGGATGTTTAGGATACTGCTGGGCATTCTTAGTATAAGTGACTACTCTGTTCCCCTGAGACAGACAGAGGTGTTTATTCACTGTGTTTGGATCCAGACTGAGCTGACAGGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU488209 lncRNA downstream 1570 11139914 ~ 11140117 (-) True G425167
TU488168 lncRNA downstream 3977 11137377 ~ 11137710 (-) True G425126
TU488143 lncRNA downstream 140093 10934381 ~ 11001594 (-) True G425104
TU487939 lncRNA downstream 241786 10899107 ~ 10899901 (-) True G424932
TU487914 lncRNA downstream 292204 10849201 ~ 10849483 (-) True G424907
TU488232 lncRNA upstream 63663 11205622 ~ 11257296 (-) True G425188
TU488235 lncRNA upstream 63957 11205916 ~ 11251704 (-) True G425190
TU488269 lncRNA upstream 81409 11223368 ~ 11224952 (-) True G425215
TU488276 lncRNA upstream 89131 11231090 ~ 11233028 (-) True G425222
TU488231 lncRNA upstream 103223 11245182 ~ 11250211 (-) True G425187
CI01000304_11124801_11135838.mRNA mRNA downstream 4345 11124157 ~ 11137342 (-) True CI01000304_11124801_11135838
CI01000304_11110559_11121354.mRNA mRNA downstream 19516 11110463 ~ 11122171 (-) True CI01000304_11110559_11121354
CI01000304_11083948_11091592.mRNA mRNA downstream 50095 11083838 ~ 11091592 (-) True CI01000304_11083948_11091592
CI01000304_11065581_11077156.mRNA mRNA downstream 64531 11065239 ~ 11077156 (-) True CI01000304_11065581_11077156
CI01000304_10812673_10812980.mRNA mRNA downstream 326449 10812533 ~ 10815238 (-) False CI01000304_10812673_10812980
CI01000304_11272501_11275583.mRNA mRNA upstream 130265 11272224 ~ 11275583 (-) True CI01000304_11272501_11275583
CI01000304_11282245_11288087.mRNA mRNA upstream 140182 11282141 ~ 11288087 (-) True CI01000304_11282245_11288087
CI01000304_11304660_11306789.mRNA mRNA upstream 162601 11304560 ~ 11306871 (-) True CI01000304_11304660_11306789
CI01000304_11330383_11335607.mRNA mRNA upstream 187683 11329642 ~ 11336120 (-) True CI01000304_11330383_11335607
CI01000304_11338304_11348212.mRNA mRNA upstream 196060 11338019 ~ 11348212 (-) False CI01000304_11338304_11348212
TU487810 other downstream 599022 10444355 ~ 10542665 (-) True G424808
TU487433 other downstream 948792 10192696 ~ 10192895 (-) True G424459
TU487428 other downstream 977357 10153446 ~ 10164330 (-) False G424458
TU487429 other downstream 977357 10153859 ~ 10164330 (-) True G424458
TU487077 other downstream 1402216 9739353 ~ 9739471 (-) True G424168
TU488239 other upstream 205061 11354883 ~ 11357146 (-) False G425194
TU488240 other upstream 205061 11354883 ~ 11357146 (-) True G425194
TU488688 other upstream 726718 11868677 ~ 11872906 (-) True G425580
TU489285 other upstream 1194742 12336701 ~ 12340228 (-) True G426106
TU489325 other upstream 1416895 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998

Expression Profile