RNA id: TU488283


Basic Information

Item Value
RNA id TU488283
length 772
lncRNA type antisense_over
GC content 0.50
exon number 1
gene id G425228
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11266326 ~ 11267097 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCATTACAGCAGCTTTAATTATATCCTTATTTTTGCAATTCTGTTTTGTGCCACTAGAGGCACAAACCTTACACACCAAATGATAGAACTTGTGAATAAGGTCAGAATTATCATAATCACCCTGAAAAAGGCAAAAGCAGCAAGCATGAGCAACAGCACTACATTCCTTCTCCTTTTGGAGGACGCAAAGAGCAGGTAGACGCCCTGCAGACGGGCGGTAAGAGCTTGAGACTGTCGCAGCCGAGGGGCTTCTGAAGCTGAGGGGCTGGACATTGACAGAATGGGATTTGGAAGAACCAGGGACTCCTTCAAAACCACCAGCACATAGAGGAGGTTTACCAGATGCACACAGGCTGCGGTGAGGAAGGGCCAAGTGAAGCCAGCTGCTTCAATGTAGAATCCAGTGCACAGAGAAGCTAAGCCAGTCAAAACCCCTAAAATCATGTCCAGTCGAGCCATTCGGACAGTTTTCTGTCCTTCTGGATCTTCTCCGCAGACATCAGCCACATAGGCGAAACATCCACCAATCAGACTGGCGGGTCCGCCCATCAGGCCTGTTAGGAAGGAGGCAGCTAACAGGTAATTGAGGTTGAAGGAGAATCTACTGACCAAAGCGTAGCTCAGGGAGAACAGAGTGTCGCCCACCAGAGGAGGAACGATGGCAACTTTACGCCCGCAGTAGTCACTGTATGAGACCAGGAGCAGTGCGGATATGAGACTGGGAACGAGAAAGCACAGTTCACTCTGGAGGAGGAAAAGCGATGTCTCCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU488232 lncRNA downstream 9030 11205622 ~ 11257296 (-) True G425188
TU488235 lncRNA downstream 14622 11205916 ~ 11251704 (-) True G425190
TU488231 lncRNA downstream 16115 11245182 ~ 11250211 (-) True G425187
TU488276 lncRNA downstream 33298 11231090 ~ 11233028 (-) True G425222
TU488269 lncRNA downstream 41374 11223368 ~ 11224952 (-) True G425215
TU488284 lncRNA upstream 1100 11268197 ~ 11268449 (-) True G425229
TU488285 lncRNA upstream 2088 11269185 ~ 11270488 (-) True G425230
TU488258 lncRNA upstream 13879 11280976 ~ 11281204 (-) True G425204
TU488328 lncRNA upstream 162520 11429617 ~ 11430150 (-) True G425269
TU488564 lncRNA upstream 180530 11447627 ~ 11447954 (-) True G425479
CI01000304_11124801_11135838.mRNA mRNA downstream 128984 11124157 ~ 11137342 (-) True CI01000304_11124801_11135838
CI01000304_11110559_11121354.mRNA mRNA downstream 144155 11110463 ~ 11122171 (-) True CI01000304_11110559_11121354
CI01000304_11083948_11091592.mRNA mRNA downstream 174734 11083838 ~ 11091592 (-) True CI01000304_11083948_11091592
CI01000304_11065581_11077156.mRNA mRNA downstream 189170 11065239 ~ 11077156 (-) True CI01000304_11065581_11077156
CI01000304_10812673_10812980.mRNA mRNA downstream 451088 10812533 ~ 10815238 (-) False CI01000304_10812673_10812980
CI01000304_11272501_11275583.mRNA mRNA upstream 5127 11272224 ~ 11275583 (-) True CI01000304_11272501_11275583
CI01000304_11282245_11288087.mRNA mRNA upstream 15044 11282141 ~ 11288087 (-) True CI01000304_11282245_11288087
CI01000304_11304660_11306789.mRNA mRNA upstream 37463 11304560 ~ 11306871 (-) True CI01000304_11304660_11306789
CI01000304_11330383_11335607.mRNA mRNA upstream 62545 11329642 ~ 11336120 (-) True CI01000304_11330383_11335607
CI01000304_11338304_11348212.mRNA mRNA upstream 70922 11338019 ~ 11348212 (-) False CI01000304_11338304_11348212
TU487810 other downstream 723661 10444355 ~ 10542665 (-) True G424808
TU487433 other downstream 1073431 10192696 ~ 10192895 (-) True G424459
TU487428 other downstream 1101996 10153446 ~ 10164330 (-) False G424458
TU487429 other downstream 1101996 10153859 ~ 10164330 (-) True G424458
TU487077 other downstream 1526855 9739353 ~ 9739471 (-) True G424168
TU488239 other upstream 79923 11354883 ~ 11357146 (-) False G425194
TU488240 other upstream 79923 11354883 ~ 11357146 (-) True G425194
TU488688 other upstream 601580 11868677 ~ 11872906 (-) True G425580
TU489285 other upstream 1069604 12336701 ~ 12340228 (-) True G426106
TU489325 other upstream 1291757 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998

Expression Profile