RNA id: TU488112


Basic Information

Item Value
RNA id TU488112
length 341
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G425081
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11280527 ~ 11280867 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTACGAAAAGAGCTTTTATTTCATTAGGCTCTTAGAACATACTAATCTAAATCTACCATATTCTTTATTATATTTTATAATATATAATGGAAACAAATGTGAGTACCACAGACTTTGAGATCTACATATATTGTATACATGCAAAATTCATGGTTCTAACCTTAAATTCTGTCATTATTTACGCACCCTCATGTCTTTCCACACCCGTAAGACCTTCGTTCATCTTCGAAACACAAATTAAGATATTTTAAATGAAATCTGATGGCTCAGTGAGGCCTGCATCGCCACTCCCTTTTTCAATGCCCAGAAAGCTACTAAAACATATTTAAAACAGTTCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU488078 lncRNA upstream 71502 11192185 ~ 11209025 (+) True G425048
TU488103 lncRNA upstream 142819 11137389 ~ 11137708 (+) True G425073
TU488042 lncRNA upstream 158353 11116120 ~ 11122174 (+) True G425027
TU488088 lncRNA upstream 207795 11072329 ~ 11072732 (+) True G425058
TU488082 lncRNA upstream 208371 11066492 ~ 11072156 (+) True G425052
TU488074 lncRNA downstream 96 11280963 ~ 11281207 (+) True G425044
TU488117 lncRNA downstream 41064 11321931 ~ 11321987 (+) False G425085
TU488118 lncRNA downstream 41064 11321931 ~ 11321987 (+) True G425085
TU488056 lncRNA downstream 48801 11329668 ~ 11338444 (+) True G425030
TU488064 lncRNA downstream 66412 11347279 ~ 11355129 (+) True G425036
CI01000304_11264394_11268134.mRNA mRNA upstream 12393 11264394 ~ 11268134 (+) True CI01000304_11264394_11268134
CI01000304_11215537_11253484.mRNA mRNA upstream 26946 11214937 ~ 11253581 (+) True CI01000304_11215537_11253484
CI01000304_11170412_11182604.mRNA mRNA upstream 97886 11169866 ~ 11182641 (+) True CI01000304_11170412_11182604
CI01000304_11140964_11155540.mRNA mRNA upstream 124635 11140964 ~ 11155892 (+) True CI01000304_11140964_11155540
CI01000304_11011297_11032025.mRNA mRNA upstream 248441 11009578 ~ 11032086 (+) True CI01000304_11011297_11032025
CI01000304_11288992_11297645.mRNA mRNA downstream 8125 11288992 ~ 11298149 (+) True CI01000304_11288992_11297645
CI01000304_11301321_11304134.mRNA mRNA downstream 20011 11300878 ~ 11304432 (+) True CI01000304_11301321_11304134
CI01000304_11308263_11317998.mRNA mRNA downstream 26181 11307048 ~ 11318063 (+) True CI01000304_11308263_11317998
CI01000304_11318496_11322260.mRNA mRNA downstream 37569 11318436 ~ 11322489 (+) False CI01000304_11318496_11322260
CI01000304_11323923_11325889.mRNA mRNA downstream 42628 11323495 ~ 11325905 (+) False CI01000304_11323923_11325889
TU487556 other upstream 724823 10555614 ~ 10555704 (+) True G424559
TU487195 other upstream 1087632 10189315 ~ 10189404 (+) True G424251
TU487194 other upstream 1088729 10188822 ~ 10189404 (+) False G424251
TU487178 other upstream 1153205 10120399 ~ 10127322 (+) True G424246
TU486746 other upstream 1714954 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU488854 other downstream 1147838 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other downstream 1147838 12436554 ~ 12436605 (+) True G425718
TU488852 other downstream 1156937 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU489575 other downstream 2275584 13556451 ~ 13573943 (+) True G426349
TU489538 other downstream 3049181 14330048 ~ 14330886 (+) True G426312

Expression Profile