RNA id: TU488328


Basic Information

Item Value
RNA id TU488328
length 534
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G425269
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11429617 ~ 11430150 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGACCACAGAGAGTCAGGACCTCGGTTTAATGTCTCATCCGAAGGATGGATATACTGTAGAATAACTGTAGCTAGCAAAGAAAAAAACAAATCATTTCTAGAAATGACTGGAACTTGCAATCAAAAATAAATAAAACAAGATTGCAACCCTGCAGGGAACTAGAAAAAAATACGATTTGTTAACAAAATAAATTCAAGAGAGAAACCAAAAAATAAGGCTTGGGAGAACTAGAGAAAAAAATAAAGACTAGAACTAGACTAGAGTAAAAACTAGAATTTATCAATAAGGAAATAAATCAATACAAGACTAGACTGGCAGGGAAAAAAACTAGTGATGCACTCAAAAAAATGATTTTTTGATGCTGTTCACTTTATTTAAACAACTTATTTTGATTCAACACAATTGTATTAGGTTTCTGGTACAAATTTAATTGCTTCATGTTAAATTGACTTGAAACGATTACTTTTTGACTTAACTTGATGTTTTCATATTAAAATAACATGTTTCAATCAAGTAAACTCAACCAGGACTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU488258 lncRNA downstream 148413 11280976 ~ 11281204 (-) True G425204
TU488285 lncRNA downstream 159129 11269185 ~ 11270488 (-) True G425230
TU488284 lncRNA downstream 161168 11268197 ~ 11268449 (-) True G425229
TU488283 lncRNA downstream 162520 11266326 ~ 11267097 (-) True G425228
TU488231 lncRNA downstream 179406 11245182 ~ 11250211 (-) True G425187
TU488564 lncRNA upstream 17477 11447627 ~ 11447954 (-) True G425479
TU488617 lncRNA upstream 149081 11579231 ~ 11579432 (-) True G425517
TU488636 lncRNA upstream 168739 11598889 ~ 11599266 (-) True G425533
TU488666 lncRNA upstream 242212 11672362 ~ 11672698 (-) True G425559
TU488655 lncRNA upstream 266444 11696594 ~ 11698398 (-) True G425549
CI01000304_11368905_11374145.mRNA mRNA downstream 55472 11368859 ~ 11374145 (-) True CI01000304_11368905_11374145
CI01000304_11359135_11362408.mRNA mRNA downstream 67209 11358917 ~ 11362408 (-) True CI01000304_11359135_11362408
CI01000304_11338304_11348212.mRNA mRNA downstream 81405 11338019 ~ 11348212 (-) False CI01000304_11338304_11348212
CI01000304_11330383_11335607.mRNA mRNA downstream 93497 11329642 ~ 11336120 (-) True CI01000304_11330383_11335607
CI01000304_11304660_11306789.mRNA mRNA downstream 122746 11304560 ~ 11306871 (-) True CI01000304_11304660_11306789
CI01000304_11445002_11447156.mRNA mRNA upstream 13581 11443731 ~ 11447156 (-) True CI01000304_11445002_11447156
CI01000304_11479874_11503083.mRNA mRNA upstream 49520 11479670 ~ 11503494 (-) True CI01000304_11479874_11503083
CI01000304_11526057_11569114.mRNA mRNA upstream 95849 11525999 ~ 11569114 (-) True CI01000304_11526057_11569114
CI01000304_11575414_11578638.mRNA mRNA upstream 145178 11575328 ~ 11578638 (-) True CI01000304_11575414_11578638
CI01000304_11638983_11647850.mRNA mRNA upstream 208263 11638413 ~ 11649085 (-) True CI01000304_11638983_11647850
TU488239 other downstream 72471 11354883 ~ 11357146 (-) False G425194
TU488240 other downstream 72471 11354883 ~ 11357146 (-) True G425194
TU487810 other downstream 886952 10444355 ~ 10542665 (-) True G424808
TU487433 other downstream 1236722 10192696 ~ 10192895 (-) True G424459
TU487428 other downstream 1265287 10153446 ~ 10164330 (-) False G424458
TU488688 other upstream 438527 11868677 ~ 11872906 (-) True G425580
TU489285 other upstream 906551 12336701 ~ 12340228 (-) True G426106
TU489325 other upstream 1128704 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998
TU489324 other upstream 1128872 12559022 ~ 12560135 (-) True CI01000304_12559311_12559998
TU489350 other upstream 1265848 12719497 ~ 12805926 (-) True G426147

Expression Profile