RNA id: TU488564


Basic Information

Item Value
RNA id TU488564
length 328
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G425479
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11447627 ~ 11447954 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTACAATCAGTGGCTACAACAGACTTCTAGTTCCCAGCATGCTTTGCTTCTGACTGTTAAAGGAGAGTAAATGTTAAAATTGAGTGCTATTTTATGTGTTTTGCTCAATATTGATATAGGAGGAGATCTGTTAGTGTTTAAAGTTGTATTATTTTGGAATTTAAAAGGTTTTCTGGAATGTGTAAGTTACCAGTTACCATTGTGCTGAAGAGTAGAGCCTGTGTTTAGGTTTATGATTGGCTGAACACCATTAAGACTATAATAGTTTTATTTTAAAAATAACAGCTGTGCATGCTATAACACAGTGATAGTCTCTTTGGTAGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU488328 lncRNA downstream 17477 11429617 ~ 11430150 (-) True G425269
TU488258 lncRNA downstream 166423 11280976 ~ 11281204 (-) True G425204
TU488285 lncRNA downstream 177139 11269185 ~ 11270488 (-) True G425230
TU488284 lncRNA downstream 179178 11268197 ~ 11268449 (-) True G425229
TU488283 lncRNA downstream 180530 11266326 ~ 11267097 (-) True G425228
TU488617 lncRNA upstream 131277 11579231 ~ 11579432 (-) True G425517
TU488636 lncRNA upstream 150935 11598889 ~ 11599266 (-) True G425533
TU488666 lncRNA upstream 224408 11672362 ~ 11672698 (-) True G425559
TU488655 lncRNA upstream 248640 11696594 ~ 11698398 (-) True G425549
TU488656 lncRNA upstream 253210 11701164 ~ 11703380 (-) True G425550
CI01000304_11445002_11447156.mRNA mRNA downstream 471 11443731 ~ 11447156 (-) True CI01000304_11445002_11447156
CI01000304_11368905_11374145.mRNA mRNA downstream 73482 11368859 ~ 11374145 (-) True CI01000304_11368905_11374145
CI01000304_11359135_11362408.mRNA mRNA downstream 85219 11358917 ~ 11362408 (-) True CI01000304_11359135_11362408
CI01000304_11338304_11348212.mRNA mRNA downstream 99415 11338019 ~ 11348212 (-) False CI01000304_11338304_11348212
CI01000304_11330383_11335607.mRNA mRNA downstream 111507 11329642 ~ 11336120 (-) True CI01000304_11330383_11335607
CI01000304_11479874_11503083.mRNA mRNA upstream 31716 11479670 ~ 11503494 (-) True CI01000304_11479874_11503083
CI01000304_11526057_11569114.mRNA mRNA upstream 78045 11525999 ~ 11569114 (-) True CI01000304_11526057_11569114
CI01000304_11575414_11578638.mRNA mRNA upstream 127374 11575328 ~ 11578638 (-) True CI01000304_11575414_11578638
CI01000304_11638983_11647850.mRNA mRNA upstream 190459 11638413 ~ 11649085 (-) True CI01000304_11638983_11647850
CI01000304_11654405_11655792.mRNA mRNA upstream 205981 11653935 ~ 11656016 (-) True CI01000304_11654405_11655792
TU488239 other downstream 90481 11354883 ~ 11357146 (-) False G425194
TU488240 other downstream 90481 11354883 ~ 11357146 (-) True G425194
TU487810 other downstream 904962 10444355 ~ 10542665 (-) True G424808
TU487433 other downstream 1254732 10192696 ~ 10192895 (-) True G424459
TU487429 other downstream 1283297 10153859 ~ 10164330 (-) True G424458
TU488688 other upstream 420723 11868677 ~ 11872906 (-) True G425580
TU489285 other upstream 888747 12336701 ~ 12340228 (-) True G426106
TU489325 other upstream 1110900 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998
TU489324 other upstream 1111068 12559022 ~ 12560135 (-) True CI01000304_12559311_12559998
TU489350 other upstream 1248044 12719497 ~ 12805926 (-) True G426147

Expression Profile