RNA id: TU488376


Basic Information

Item Value
RNA id TU488376
length 213
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G425316
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11512489 ~ 11512701 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCAAAATTTGCAGATCAGTAGGTGGATGGAACCATAATGAGGCCAGTGTTGGGTAAGTTACTTCAGAAAAGTAATTAATTACTAATTACATCATTAAAGTTGTATTTAAAATACTTTTCTAATTACTCTGTCTGAAAAGTAATTTAATTACTCAGTAAGTAATTCAACTCATTACTAATTAATTCTTAAAATCCCTATAAAGCTTGACCGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU488354 lncRNA upstream 42484 11469766 ~ 11470005 (+) True G425294
TU488337 lncRNA upstream 66116 11435670 ~ 11446373 (+) True G425277
TU488332 lncRNA upstream 79448 11432780 ~ 11433041 (+) True G425273
TU488064 lncRNA upstream 157360 11347279 ~ 11355129 (+) True G425036
TU488079 lncRNA upstream 162425 11348053 ~ 11350064 (+) True G425049
TU488377 lncRNA downstream 2071 11514772 ~ 11526899 (+) True G425317
TU488403 lncRNA downstream 53253 11565954 ~ 11569871 (+) True G425338
TU488422 lncRNA downstream 108405 11621106 ~ 11621440 (+) True G425354
TU488424 lncRNA downstream 110104 11622805 ~ 11623009 (+) True G425356
TU488426 lncRNA downstream 111519 11624220 ~ 11624518 (+) True G425358
CI01000304_11449463_11453214.mRNA mRNA upstream 59174 11448966 ~ 11453315 (+) True CI01000304_11449463_11453214
CI01000304_11323923_11325889.mRNA mRNA upstream 186584 11323495 ~ 11325905 (+) False CI01000304_11323923_11325889
CI01000304_11318496_11322260.mRNA mRNA upstream 190000 11318436 ~ 11322489 (+) False CI01000304_11318496_11322260
CI01000304_11308263_11317998.mRNA mRNA upstream 194426 11307048 ~ 11318063 (+) True CI01000304_11308263_11317998
CI01000304_11301321_11304134.mRNA mRNA upstream 208057 11300878 ~ 11304432 (+) True CI01000304_11301321_11304134
CI01000304_11570457_11574856.mRNA mRNA downstream 57756 11570457 ~ 11575290 (+) True CI01000304_11570457_11574856
CI01000304_11582257_11610398.mRNA mRNA downstream 69107 11581808 ~ 11610611 (+) True CI01000304_11582257_11610398
CI01000304_11613446_11620345.mRNA mRNA downstream 100745 11613446 ~ 11620563 (+) True CI01000304_11613446_11620345
CI01000304_11676155_11681977.mRNA mRNA downstream 163454 11676155 ~ 11683131 (+) True CI01000304_11676155_11681977
CI01000304_11685224_11691071.mRNA mRNA downstream 172523 11685224 ~ 11691071 (+) True CI01000304_11685224_11691071
TU487556 other upstream 956785 10555614 ~ 10555704 (+) True G424559
TU487195 other upstream 1319594 10189315 ~ 10189404 (+) True G424251
TU487194 other upstream 1320691 10188822 ~ 10189404 (+) False G424251
TU487178 other upstream 1385167 10120399 ~ 10127322 (+) True G424246
TU486746 other upstream 1946916 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU488854 other downstream 916004 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other downstream 916004 12436554 ~ 12436605 (+) True G425718
TU488852 other downstream 925103 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU489575 other downstream 2043750 13556451 ~ 13573943 (+) True G426349
TU489538 other downstream 2817347 14330048 ~ 14330886 (+) True G426312

Expression Profile