RNA id: TU488422


Basic Information

Item Value
RNA id TU488422
length 335
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G425354
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11621106 ~ 11621440 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAACGATTCATCCGCTCAAAAACTATTTCGTTCATGTATCACCACTGTTTTTTGTCTCATGAGTGTTTATATGGTTATCAATTGTCTACGAAAACGAACACTTTGCTTTCCATAACATTTAGTTGTACATTTCTTCTAGTAAATATGAGATAAAATAATATTAAATAATAAAAAAAGTGTAACAATTTGCATATAGCTCTTTTTAAGGCGATGCTGAGGAAATCCTCATCTTCTAAACCATAATAATGATGGAACATTTTAAGTCCTGGCAACATTTAAAGGATTAGTTCACTTTCAAATGAAAATTACCCCAAGCTTTACTTACCCTCAAGCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU488403 lncRNA upstream 51235 11565954 ~ 11569871 (+) True G425338
TU488377 lncRNA upstream 94207 11514772 ~ 11526899 (+) True G425317
TU488376 lncRNA upstream 108405 11512489 ~ 11512701 (+) True G425316
TU488354 lncRNA upstream 151101 11469766 ~ 11470005 (+) True G425294
TU488337 lncRNA upstream 174733 11435670 ~ 11446373 (+) True G425277
TU488424 lncRNA downstream 1365 11622805 ~ 11623009 (+) True G425356
TU488426 lncRNA downstream 2780 11624220 ~ 11624518 (+) True G425358
TU488427 lncRNA downstream 3151 11624591 ~ 11624842 (+) True G425359
TU488429 lncRNA downstream 4081 11625521 ~ 11625765 (+) True G425361
TU488430 lncRNA downstream 4644 11626084 ~ 11626301 (+) True G425362
CI01000304_11613446_11620345.mRNA mRNA upstream 543 11613446 ~ 11620563 (+) True CI01000304_11613446_11620345
CI01000304_11582257_11610398.mRNA mRNA upstream 10495 11581808 ~ 11610611 (+) True CI01000304_11582257_11610398
CI01000304_11570457_11574856.mRNA mRNA upstream 45816 11570457 ~ 11575290 (+) True CI01000304_11570457_11574856
CI01000304_11449463_11453214.mRNA mRNA upstream 167791 11448966 ~ 11453315 (+) True CI01000304_11449463_11453214
CI01000304_11323923_11325889.mRNA mRNA upstream 295201 11323495 ~ 11325905 (+) False CI01000304_11323923_11325889
CI01000304_11676155_11681977.mRNA mRNA downstream 54715 11676155 ~ 11683131 (+) True CI01000304_11676155_11681977
CI01000304_11685224_11691071.mRNA mRNA downstream 63784 11685224 ~ 11691071 (+) True CI01000304_11685224_11691071
CI01000304_11812792_11817948.mRNA mRNA downstream 191074 11812514 ~ 11818413 (+) True CI01000304_11812792_11817948
CI01000304_11866424_11868022.mRNA mRNA downstream 244660 11866100 ~ 11868083 (+) True CI01000304_11866424_11868022
CI01000304_11993486_12061098.mRNA mRNA downstream 372046 11993486 ~ 12062218 (+) True CI01000304_11993486_12061098
TU487556 other upstream 1065402 10555614 ~ 10555704 (+) True G424559
TU487195 other upstream 1428211 10189315 ~ 10189404 (+) True G424251
TU487194 other upstream 1429308 10188822 ~ 10189404 (+) False G424251
TU487178 other upstream 1493784 10120399 ~ 10127322 (+) True G424246
TU486746 other upstream 2055533 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU488854 other downstream 807265 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other downstream 807265 12436554 ~ 12436605 (+) True G425718
TU488852 other downstream 816364 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU489575 other downstream 1935011 13556451 ~ 13573943 (+) True G426349
TU489538 other downstream 2708608 14330048 ~ 14330886 (+) True G426312

Expression Profile