RNA id: TU488426


Basic Information

Item Value
RNA id TU488426
length 299
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G425358
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11624220 ~ 11624518 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGACCAAGTTTGGTCTGAATACGATAAAGCGTTGAGGAGATAGAGCCTTAAGTCTATTTTCACAAGCGCTACGTATAATTCGTTCGCACGTTTTTCTAAAACGGTTTGACAAATCAACCTGGATTCCACAACTTTTTGTTGACATGGTCTAAAGATTATCCGGTTCAATTTTCGTGAAGGAGGAGTTCAGTATGTAAAAGTATGTTTTTTTTGGAAAATTCAATATTGCGGGAAAATTTTCATGACGGAAAATGACGTTGTGGGTGCAATCGAATCGTCTTGAGTCAAGGAATCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU488424 lncRNA upstream 1211 11622805 ~ 11623009 (+) True G425356
TU488422 lncRNA upstream 2780 11621106 ~ 11621440 (+) True G425354
TU488403 lncRNA upstream 54349 11565954 ~ 11569871 (+) True G425338
TU488377 lncRNA upstream 97321 11514772 ~ 11526899 (+) True G425317
TU488376 lncRNA upstream 111519 11512489 ~ 11512701 (+) True G425316
TU488427 lncRNA downstream 73 11624591 ~ 11624842 (+) True G425359
TU488429 lncRNA downstream 1003 11625521 ~ 11625765 (+) True G425361
TU488430 lncRNA downstream 1566 11626084 ~ 11626301 (+) True G425362
TU488431 lncRNA downstream 1790 11626308 ~ 11626602 (+) True G425363
TU488432 lncRNA downstream 4345 11628863 ~ 11629178 (+) True G425364
CI01000304_11613446_11620345.mRNA mRNA upstream 3657 11613446 ~ 11620563 (+) True CI01000304_11613446_11620345
CI01000304_11582257_11610398.mRNA mRNA upstream 13609 11581808 ~ 11610611 (+) True CI01000304_11582257_11610398
CI01000304_11570457_11574856.mRNA mRNA upstream 48930 11570457 ~ 11575290 (+) True CI01000304_11570457_11574856
CI01000304_11449463_11453214.mRNA mRNA upstream 170905 11448966 ~ 11453315 (+) True CI01000304_11449463_11453214
CI01000304_11323923_11325889.mRNA mRNA upstream 298315 11323495 ~ 11325905 (+) False CI01000304_11323923_11325889
CI01000304_11676155_11681977.mRNA mRNA downstream 51637 11676155 ~ 11683131 (+) True CI01000304_11676155_11681977
CI01000304_11685224_11691071.mRNA mRNA downstream 60706 11685224 ~ 11691071 (+) True CI01000304_11685224_11691071
CI01000304_11812792_11817948.mRNA mRNA downstream 187996 11812514 ~ 11818413 (+) True CI01000304_11812792_11817948
CI01000304_11866424_11868022.mRNA mRNA downstream 241582 11866100 ~ 11868083 (+) True CI01000304_11866424_11868022
CI01000304_11993486_12061098.mRNA mRNA downstream 368968 11993486 ~ 12062218 (+) True CI01000304_11993486_12061098
TU487556 other upstream 1068516 10555614 ~ 10555704 (+) True G424559
TU487195 other upstream 1431325 10189315 ~ 10189404 (+) True G424251
TU487194 other upstream 1432422 10188822 ~ 10189404 (+) False G424251
TU487178 other upstream 1496898 10120399 ~ 10127322 (+) True G424246
TU486746 other upstream 2058647 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU488854 other downstream 804187 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other downstream 804187 12436554 ~ 12436605 (+) True G425718
TU488852 other downstream 813286 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU489575 other downstream 1931933 13556451 ~ 13573943 (+) True G426349
TU489538 other downstream 2705530 14330048 ~ 14330886 (+) True G426312

Expression Profile