RNA id: TU488427


Basic Information

Item Value
RNA id TU488427
length 252
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G425359
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11624591 ~ 11624842 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTAAAGGGATTGAGTTAGAGACTCCAAATTTGCTATGGTGACAGTTTAGAGAGGTTTCTATCAGTGTGCCAGATTTCATAACTTTCCTGTAAGTGGTTCTATGGGCTGCCATAGACTTCCAGAGTGGAAGGAACGGAAGAAGAAGAAGAAGGCCAACGGATACAATAGGTTCTTCAGTGCTTGGCCCCTAATAATAATAGTTGATGTTGTTGTTAATAATACTACTACTAAATATATGTGTTAAAATATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU488426 lncRNA upstream 73 11624220 ~ 11624518 (+) True G425358
TU488424 lncRNA upstream 1582 11622805 ~ 11623009 (+) True G425356
TU488422 lncRNA upstream 3151 11621106 ~ 11621440 (+) True G425354
TU488403 lncRNA upstream 54720 11565954 ~ 11569871 (+) True G425338
TU488377 lncRNA upstream 97692 11514772 ~ 11526899 (+) True G425317
TU488429 lncRNA downstream 679 11625521 ~ 11625765 (+) True G425361
TU488430 lncRNA downstream 1242 11626084 ~ 11626301 (+) True G425362
TU488431 lncRNA downstream 1466 11626308 ~ 11626602 (+) True G425363
TU488432 lncRNA downstream 4021 11628863 ~ 11629178 (+) True G425364
TU488434 lncRNA downstream 5353 11630195 ~ 11630494 (+) True G425366
CI01000304_11613446_11620345.mRNA mRNA upstream 4028 11613446 ~ 11620563 (+) True CI01000304_11613446_11620345
CI01000304_11582257_11610398.mRNA mRNA upstream 13980 11581808 ~ 11610611 (+) True CI01000304_11582257_11610398
CI01000304_11570457_11574856.mRNA mRNA upstream 49301 11570457 ~ 11575290 (+) True CI01000304_11570457_11574856
CI01000304_11449463_11453214.mRNA mRNA upstream 171276 11448966 ~ 11453315 (+) True CI01000304_11449463_11453214
CI01000304_11323923_11325889.mRNA mRNA upstream 298686 11323495 ~ 11325905 (+) False CI01000304_11323923_11325889
CI01000304_11676155_11681977.mRNA mRNA downstream 51313 11676155 ~ 11683131 (+) True CI01000304_11676155_11681977
CI01000304_11685224_11691071.mRNA mRNA downstream 60382 11685224 ~ 11691071 (+) True CI01000304_11685224_11691071
CI01000304_11812792_11817948.mRNA mRNA downstream 187672 11812514 ~ 11818413 (+) True CI01000304_11812792_11817948
CI01000304_11866424_11868022.mRNA mRNA downstream 241258 11866100 ~ 11868083 (+) True CI01000304_11866424_11868022
CI01000304_11993486_12061098.mRNA mRNA downstream 368644 11993486 ~ 12062218 (+) True CI01000304_11993486_12061098
TU487556 other upstream 1068887 10555614 ~ 10555704 (+) True G424559
TU487195 other upstream 1431696 10189315 ~ 10189404 (+) True G424251
TU487194 other upstream 1432793 10188822 ~ 10189404 (+) False G424251
TU487178 other upstream 1497269 10120399 ~ 10127322 (+) True G424246
TU486746 other upstream 2059018 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU488854 other downstream 803863 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other downstream 803863 12436554 ~ 12436605 (+) True G425718
TU488852 other downstream 812962 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU489575 other downstream 1931609 13556451 ~ 13573943 (+) True G426349
TU489538 other downstream 2705206 14330048 ~ 14330886 (+) True G426312

Expression Profile