RNA id: TU488435


Basic Information

Item Value
RNA id TU488435
length 377
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G425367
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11632884 ~ 11633260 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGACAACACAGGCTGTGGAAAAATATAAGTGATCTAGGAGATTTATATAGCTTTTTTGTATGGCGGATGCCATGGAAAATACGGTAAGTCTATCCCTCACAGCCTCGCTTTCATACCTGTCATGGCACCCATTCCTACAAAATCACGTTATGATTTATATAACGTATAAATCATATTATTCACGATAAAACACGGCTATGACCGATTCACCCAACAGTTCTGCGTATCACTACACAACACCCTTAGCAACCACTCTTAGCAATGTAAACTGTATGTTCTCAATTGATATTGTTCATTGAAGCTTACTGTATTATGTAGAAGAGTATTGTGAGATAGAGATCGAGTGAGCGAGTTTATTACCTGCATTCAGATTTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU488434 lncRNA upstream 2390 11630195 ~ 11630494 (+) True G425366
TU488432 lncRNA upstream 3706 11628863 ~ 11629178 (+) True G425364
TU488431 lncRNA upstream 6282 11626308 ~ 11626602 (+) True G425363
TU488430 lncRNA upstream 6583 11626084 ~ 11626301 (+) True G425362
TU488429 lncRNA upstream 7119 11625521 ~ 11625765 (+) True G425361
TU488438 lncRNA downstream 15733 11648993 ~ 11649229 (+) True G425370
TU488462 lncRNA downstream 28506 11661766 ~ 11661999 (+) True G425392
TU488463 lncRNA downstream 28766 11662026 ~ 11662282 (+) True G425393
TU488464 lncRNA downstream 40734 11673994 ~ 11674204 (+) True G425394
TU488455 lncRNA downstream 104423 11737683 ~ 11744622 (+) True G425385
CI01000304_11613446_11620345.mRNA mRNA upstream 12321 11613446 ~ 11620563 (+) True CI01000304_11613446_11620345
CI01000304_11582257_11610398.mRNA mRNA upstream 22273 11581808 ~ 11610611 (+) True CI01000304_11582257_11610398
CI01000304_11570457_11574856.mRNA mRNA upstream 57594 11570457 ~ 11575290 (+) True CI01000304_11570457_11574856
CI01000304_11449463_11453214.mRNA mRNA upstream 179569 11448966 ~ 11453315 (+) True CI01000304_11449463_11453214
CI01000304_11323923_11325889.mRNA mRNA upstream 306979 11323495 ~ 11325905 (+) False CI01000304_11323923_11325889
CI01000304_11676155_11681977.mRNA mRNA downstream 42895 11676155 ~ 11683131 (+) True CI01000304_11676155_11681977
CI01000304_11685224_11691071.mRNA mRNA downstream 51964 11685224 ~ 11691071 (+) True CI01000304_11685224_11691071
CI01000304_11812792_11817948.mRNA mRNA downstream 179254 11812514 ~ 11818413 (+) True CI01000304_11812792_11817948
CI01000304_11866424_11868022.mRNA mRNA downstream 232840 11866100 ~ 11868083 (+) True CI01000304_11866424_11868022
CI01000304_11993486_12061098.mRNA mRNA downstream 360226 11993486 ~ 12062218 (+) True CI01000304_11993486_12061098
TU487556 other upstream 1077180 10555614 ~ 10555704 (+) True G424559
TU487195 other upstream 1439989 10189315 ~ 10189404 (+) True G424251
TU487194 other upstream 1441086 10188822 ~ 10189404 (+) False G424251
TU487178 other upstream 1505562 10120399 ~ 10127322 (+) True G424246
TU486746 other upstream 2067311 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU488854 other downstream 795445 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other downstream 795445 12436554 ~ 12436605 (+) True G425718
TU488852 other downstream 804544 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU489575 other downstream 1923191 13556451 ~ 13573943 (+) True G426349
TU489538 other downstream 2696788 14330048 ~ 14330886 (+) True G426312

Expression Profile