RNA id: TU488666


Basic Information

Item Value
RNA id TU488666
length 337
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G425559
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11672362 ~ 11672698 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGACAACAGAAACGTATTTACAGAAAACTCTCTTATAAAAATCTTAAAAGAGCCTCAAGAGTCGCTCAGCAAAAGACACAGAGCTGAAGACACTCCATTGAGAAGCCTGTAGATCTTCTTCACTGTTTATACTGTAAAAGTCACATTTAATCAGTCATAATCCTCGTAGTGTACACTGAGAAGCCAAAAGCAGGTTCACAAAACACAGCCAAAGCAATGACAGCTCTTCAGCAGGAGGCAGTGTGATTCTGTATGTGCTAGACGGACACCAATTAAATGGCTCAGATGGCATGACTTTACACTACAACAATGTCCACCTCTCCAATCAGCTTTGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU488636 lncRNA downstream 73096 11598889 ~ 11599266 (-) True G425533
TU488617 lncRNA downstream 92930 11579231 ~ 11579432 (-) True G425517
TU488564 lncRNA downstream 224408 11447627 ~ 11447954 (-) True G425479
TU488328 lncRNA downstream 242212 11429617 ~ 11430150 (-) True G425269
TU488258 lncRNA downstream 391158 11280976 ~ 11281204 (-) True G425204
TU488655 lncRNA upstream 23896 11696594 ~ 11698398 (-) True G425549
TU488656 lncRNA upstream 28466 11701164 ~ 11703380 (-) True G425550
TU488690 lncRNA upstream 218262 11890960 ~ 11891233 (-) True G425582
TU489161 lncRNA upstream 311919 11984617 ~ 11984915 (-) True G425992
TU489162 lncRNA upstream 312630 11985328 ~ 11985695 (-) True G425993
CI01000304_11665326_11670757.mRNA mRNA downstream 1402 11665259 ~ 11670960 (-) True CI01000304_11665326_11670757
CI01000304_11654405_11655792.mRNA mRNA downstream 16346 11653935 ~ 11656016 (-) True CI01000304_11654405_11655792
CI01000304_11638983_11647850.mRNA mRNA downstream 23277 11638413 ~ 11649085 (-) True CI01000304_11638983_11647850
CI01000304_11575414_11578638.mRNA mRNA downstream 93724 11575328 ~ 11578638 (-) True CI01000304_11575414_11578638
CI01000304_11526057_11569114.mRNA mRNA downstream 103248 11525999 ~ 11569114 (-) True CI01000304_11526057_11569114
CI01000304_11706322_11747949.mRNA mRNA upstream 33517 11706215 ~ 11747949 (-) True CI01000304_11706322_11747949
CI01000304_11769604_11771720.mRNA mRNA upstream 96844 11769542 ~ 11771720 (-) True CI01000304_11769604_11771720
CI01000304_11773915_11805873.mRNA mRNA upstream 100148 11772846 ~ 11808328 (-) True CI01000304_11773915_11805873
CI01000304_11845828_11848857.mRNA mRNA upstream 172916 11845614 ~ 11849163 (-) True CI01000304_11845828_11848857
CI01000304_11850324_11861609.mRNA mRNA upstream 177079 11849777 ~ 11861609 (-) True CI01000304_11850324_11861609
TU488239 other downstream 315216 11354883 ~ 11357146 (-) False G425194
TU488240 other downstream 315216 11354883 ~ 11357146 (-) True G425194
TU487810 other downstream 1129697 10444355 ~ 10542665 (-) True G424808
TU487433 other downstream 1479467 10192696 ~ 10192895 (-) True G424459
TU487429 other downstream 1508032 10153859 ~ 10164330 (-) True G424458
TU488688 other upstream 195979 11868677 ~ 11872906 (-) True G425580
TU489285 other upstream 664003 12336701 ~ 12340228 (-) True G426106
TU489325 other upstream 886156 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998
TU489324 other upstream 886324 12559022 ~ 12560135 (-) True CI01000304_12559311_12559998
TU489350 other upstream 1023300 12719497 ~ 12805926 (-) True G426147

Expression Profile