Item | Value |
---|---|
RNA id | TU488688 |
length | 4230 |
RNA type | TUCP |
GC content | 0.37 |
exon number | 1 |
gene id | G425580 |
representative | True |
Item | Value |
---|---|
chromosome id | CI01000304 |
NCBI id | null |
chromosome length | 18613800 |
location | 11868677 ~ 11872906 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
species | grasscarp (Ctenopharyngodon idella) |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU488656 | lncRNA | downstream | 165297 | 11701164 ~ 11703380 (-) | True | G425550 |
TU488655 | lncRNA | downstream | 170279 | 11696594 ~ 11698398 (-) | True | G425549 |
TU488666 | lncRNA | downstream | 195979 | 11672362 ~ 11672698 (-) | True | G425559 |
TU488636 | lncRNA | downstream | 269411 | 11598889 ~ 11599266 (-) | True | G425533 |
TU488617 | lncRNA | downstream | 289245 | 11579231 ~ 11579432 (-) | True | G425517 |
TU488690 | lncRNA | upstream | 18054 | 11890960 ~ 11891233 (-) | True | G425582 |
TU489161 | lncRNA | upstream | 111711 | 11984617 ~ 11984915 (-) | True | G425992 |
TU489162 | lncRNA | upstream | 112422 | 11985328 ~ 11985695 (-) | True | G425993 |
TU489229 | lncRNA | upstream | 170552 | 12043458 ~ 12044561 (-) | True | G426052 |
TU489239 | lncRNA | upstream | 191473 | 12064379 ~ 12065037 (-) | True | G426061 |
CI01000304_11850324_11861609.mRNA | mRNA | downstream | 7068 | 11849777 ~ 11861609 (-) | True | CI01000304_11850324_11861609 |
CI01000304_11845828_11848857.mRNA | mRNA | downstream | 19514 | 11845614 ~ 11849163 (-) | True | CI01000304_11845828_11848857 |
CI01000304_11773915_11805873.mRNA | mRNA | downstream | 60349 | 11772846 ~ 11808328 (-) | True | CI01000304_11773915_11805873 |
CI01000304_11769604_11771720.mRNA | mRNA | downstream | 96957 | 11769542 ~ 11771720 (-) | True | CI01000304_11769604_11771720 |
CI01000304_11706322_11747949.mRNA | mRNA | downstream | 120728 | 11706215 ~ 11747949 (-) | True | CI01000304_11706322_11747949 |
CI01000304_11897314_11913788.mRNA | mRNA | upstream | 23573 | 11896479 ~ 11913839 (-) | True | CI01000304_11897314_11913788 |
CI01000304_11924813_11936040.mRNA | mRNA | upstream | 51478 | 11924384 ~ 11936358 (-) | True | CI01000304_11924813_11936040 |
CI01000304_12076818_12085420.mRNA | mRNA | upstream | 203649 | 12076555 ~ 12085420 (-) | True | CI01000304_12076818_12085420 |
CI01000304_12111812_12118998.mRNA | mRNA | upstream | 238613 | 12111519 ~ 12120243 (-) | True | CI01000304_12111812_12118998 |
CI01000304_12123700_12132292.mRNA | mRNA | upstream | 250503 | 12123409 ~ 12132506 (-) | True | CI01000304_12123700_12132292 |
TU488239 | other | downstream | 511531 | 11354883 ~ 11357146 (-) | False | G425194 |
TU488240 | other | downstream | 511531 | 11354883 ~ 11357146 (-) | True | G425194 |
TU487810 | other | downstream | 1326012 | 10444355 ~ 10542665 (-) | True | G424808 |
TU487433 | other | downstream | 1675782 | 10192696 ~ 10192895 (-) | True | G424459 |
TU487428 | other | downstream | 1704347 | 10153446 ~ 10164330 (-) | False | G424458 |
TU489285 | other | upstream | 463795 | 12336701 ~ 12340228 (-) | True | G426106 |
TU489325 | other | upstream | 685948 | 12558854 ~ 12560135 (-) | False | CI01000304_12559311_12559998 |
TU489324 | other | upstream | 686116 | 12559022 ~ 12560135 (-) | True | CI01000304_12559311_12559998 |
TU489350 | other | upstream | 823092 | 12719497 ~ 12805926 (-) | True | G426147 |
TU490328 | other | upstream | 1634735 | 13507641 ~ 13507922 (-) | True | G427057 |
species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
---|---|---|---|---|---|---|---|---|
eurasian perch (Perca fluviatilis) | TU11968 | True | 1759 | lncRNA | 0.40 | 2 | NC_053112.1 | 30424606 ~ 30426457 (+) |
tiger barb (Puntius tetrazona) | TU11968 | True | 2280 | lncRNA | 0.47 | 3 | NC_056699.1 | 30943498 ~ 30957486 (-) |
mexican tetra (Astyanax mexicanus) | TU11968 | False | 1259 | lncRNA | 0.37 | 5 | NC_035898.1 | 7894388 ~ 7896904 (+) |