RNA id: TU488688



Basic Information


Item Value
RNA id TU488688
length 4230
RNA type TUCP
GC content 0.37
exon number 1
gene id G425580
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11868677 ~ 11872906 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAAAGCCATTTATTAGTTGACAGTTATAATTTTTAAGGCCTGTAAATGCCCAGTTCCCTACTGGGAAATGATGCAATGCAGTAAAAACCTATACATACACAGTGCCCAGTACATGTCTGATAGACATAAATAAGCTCATATTTCATCTCAGCTAAAAACAAAGTGGGTTTATTTCTTCAACACTATACAGAAATGTCAAATTTGCATGTGTGCATCATTCACAACATGTGGCATAAAACACATGCAATACAATGCATGGCCTGTAATTCCACATTAATCAGCCTTGAAAGCTTTTAAATCATATGGCCTCATTTTTAGTCAGATCTCTCATTTATATTACAATAAAGCTGTAAACATTTTGATCAGGAAAAAATGTACATATTTATATTTAGTCATCTTTTATGACAAATGATTTCCTCTCATCAGATGCTGAGCTGTGTGAAACCTCATTCAAACAGTACTGCGAACAAAGATGATTGCTGCAAGACTCATTTAAATTCTTCCTGCTGGCTGGCCATTTTCTCAAACACAAGGCTGAAGGCGCTCCAGAGCACACATGTAAAGGTAAATAGACTGTTGCTGTGAACATTTCTTGGTGAGCTCATTACAATTCCCTTTGGTGCTTTGTTCTTTTAGCCATTGTTTGTTTGCATTACCTGAAACTAATTAGTGGATTTTTTTGTATTTAAAAGGTCTGCGTTTTGAAAAAAAGAGCTTTTGCTGGAACAATCATAGCAAACATGATCAGTATGAGTGTTTGTATCAAATTGATCCTTAAAAGGTTGTACAAAAATGTTAATGTGTCAATCTTTCATTGAGAACAAAAAAAGTACAACAACCATCTCAGCTCTAAATAACATTACCATGCATTTTCATTGAGCTAAAATCAAGCCATTACATCCTCATTATCCTCAATCATTATGGAGCTTTGTTTGAATAAATCACTGGTAAATTATTTTATAGCGCCTGTGGTTTAAATGGCAGAGATTTACACACTTTTATTGTGGCACTTCTGTAATAGACTGAGGTTTAAGGGTTTAACACCCTCTGACCCACAGAAAAACATGTCAGTAAAACAGCTGCTCTTATGCACAAAAACCCAAAGGTTGGAATGCTGGTTGTGTTCATGGTCTGTCAATATCTTGATTCATTGGTATGGATTTAAAACCCCTGTAAATCTTTTTTAAAACACATCACACAACCACAAAGTAATTTGTATAAATTTCCAAAAATAGTAGAGTATGAAGCGCTGGTCTCTATAGTTGTTCTTGAATTACAATTCCCTCAACATTCCTCTCTGATTCAGTGATCTTTAACTTTCAGTCACTCTGGAGTATCATTGGACTTTTAAGTACACGCAAGTGTTAGATGACAATGTGTGGCATACGCACTCGAAAAATAAAAATTAGCTTAATTAAACTGAAGAAAACTTTACATATTTTTTTCAGAAATAAAAAAAAATATATAAATAATACTATTCTAAATTATTGAATAATGTGTAAAATAAAATGTAATATATATACAGGGGTTGGAAACACTGGCCAATATAGTAGAGGTTTGCCTAAATATGAGTATATACAGTGTATTGCAAACCACACAACATAATGGAAGCCATATCAGAGTTCAAAAGATGCCAAATTGTTGATGCGCACCAAACCATTCTGGAGGACCATGTGCAGCTAATGGTTCAAACATTGTACCCTGAAGGGGGTGCCGTGTATCAGCATGATAATACACCAATACACACAGCAAGACTTGTGACAGAATGGTTTGATGAACATGAAAGTGAAGCTGAACATCTTCTATGGCCTGGACAGTTACGAGATATAAATATTTTTGAGCCACTTTGGGGTATTTTGGAGGAGCAAGTCAGAAAACGTTTTCTTCCACCAGCATCACATATTGACCTGGCCACTGCTGGAGAAGGAATGGCTCAAAATCCCTCTGGGCACTGCAAAGAAATTTTATCTGTCAATCCCAAGACGAATTGATGCTGTAAAGGAGGCCCTATACCATACTAATAAATTCTAAAACCAGGTGTTTCAGTTTCATATTATATATACAATAAGGTGTGTGTATATATATATATATAGTTTTTTTTTCTAGTCACAGCATGTAAAAAAAAATAATAGACCACAGCTGGATGTAATCAGAGTCACAACTGTGCTGAAGGTTCGCTCTGCGTAAAAGGGGTAGTTCACACTGTTATGCCTATTAGCAAGTCTCTTGGTATAAAGTGAGCATGTTAGCACATGTGGCACATTATGACCTTCTTCAGTGACCTCCATGAGCTCAAATTGCTCAAAGCATCAGAGAGAATGCTAACAATGACAAATCTCTCATCCTTCTGTCAACAGTTTGAAAAAGCACTCTAAGCTGAATTAGCAAACATTAGCCCAGGGCTGTATGTTTCAAGTATGCCATTCTTTTTTATGCATCATAATTTGACTCATACTCCTTTTATGTAATATTATACCATGGTGCTTATACTGAAACATTTTATTTATTATTTTAGGGTTGGAAACGGAGAATCTGTACTTATTCGAGCCAGTTCCATTTTTTTAACGGTTTGTGTAAAGAATATCTGCACTATTCAGCGACGTCATGGCTTTGTCCAAAAGCTGAAAAATACTGCCTCCACAAGCAGGATACAGAGGTAGAAAGTCAAGGCACACCTGAATCCAATGCTTGTGCAACATCCTGTCTACTGAGATACCTTCATCTGATCGATTTTTGGAGGCCGCATAGATGTATCCTTCGCAGCTTATGATTTCCCAGTACCCTGTGCATTCAGTTCACACAGTTGTTGTACCGAAATTTTACTCGCCGTGAAATTTTGACTCCCCTGCTCCTGATTGGTTAATTCGGTGGGGAGGATGCTATACCTGAGTAGTCCCTAATCTCTAAAGCCCACACCTAATCCTAACCCTAACCCTCACAGGAAGACACAGGGGAGTCATAATCTCATGAGGAGTCAGATTACACTGTGAGAGTTGAGCTAAAAAAATAAAATTGCCATCTAAAAGTTGTGGTTGGTTCTTAGTTTGTGTGTAAATGTACATTTTAGATCAGCCATTTCCACTTTTGATGTCATTTCTAGCAAGAAATTAGTATTGTAGTAATTAAATATTCACTTAGTTATCACAAAAGCTGTCTCTTTTTTGTTGTAGATCACTGTTATACTGCCTCAGAAACCTTTCGTGAGGTACTTTCGTGTGCAAAGTGGCCTGCAAAGTTATTGCCTGATAGTCAGCTGCTTAAGCTTTCGAATGCAGCCCTAATCTGCTGCGCAAAACAGTGTGAAAAACCTGATTCCCCAACGAATGACTATATGAGGTGGTCCTTTTTAGTAAATCATAAACATCGCGACCAGTTTAGTCCGATTCCAGAATGAATGACTCTTATGAGCCGGTTCTTTTTAGTGAATCACAAACATAGAGCACAACCCAATTCCTGAATGAACAACTGTCATGAACCGATTCTTTTTAGTAAATCATAAACATACAGCACAACCAGTTTATTCCGATTCTTGAAAAAAAGAGTGTTATAAGCTGGTTCTTTTTAGTGAATCACAAACAGCACGACCAGACTAGTCCGATTCCAGAATGAACGAGTCTTATGAGCCAGTTCTTTTTAGTTGACCAAAACAAACGGAGCATCCAGTGTAGTCTAACAACTGAACAAATGACTCTTATGAGTTGGTTCTTGTTAGTGAATCAAACACATACAACATGCAATAATGAATCATAGATCACTGTTTTTAGTGATTACTGGTTATCAAATGACAACTTCCCTGCTGAAAAATCCAGCATTGCTGGTCACCAGCATAAGGTATGTTTTTGGTGGACCAGCTACTGTATACCAGTTCAATTTTGCTTGAGAACAGCATGACGATGCTTGTCCACCAGCTAGACCAGCACTATACCAGCTCTAACCAGCATAAACCAGCCTGGGGTGCGTTTCCCGGACAACGATGTAACTCGCTGCTGAACTACCATAGTACGATGCATCTTTGAACAAATCAACTAGCTAGTCACAACTGTTTCCTGAAACCGTATTGTCGCAAACCTGTCTTCAACCACATTGGTGAATGACGTTACGCAGGTGGTGAGTAATAACTTCTTTACATTAATCCGTTTGAGATCGAATTAATGCTAGATTTTCTGCTATAAATTACGGACATGGCATTAGAGAACTAATTCTCATTTTCCTCAGTTATTTTGGTTTATT

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU488656 lncRNA downstream 165297 11701164 ~ 11703380 (-) True G425550
TU488655 lncRNA downstream 170279 11696594 ~ 11698398 (-) True G425549
TU488666 lncRNA downstream 195979 11672362 ~ 11672698 (-) True G425559
TU488636 lncRNA downstream 269411 11598889 ~ 11599266 (-) True G425533
TU488617 lncRNA downstream 289245 11579231 ~ 11579432 (-) True G425517
TU488690 lncRNA upstream 18054 11890960 ~ 11891233 (-) True G425582
TU489161 lncRNA upstream 111711 11984617 ~ 11984915 (-) True G425992
TU489162 lncRNA upstream 112422 11985328 ~ 11985695 (-) True G425993
TU489229 lncRNA upstream 170552 12043458 ~ 12044561 (-) True G426052
TU489239 lncRNA upstream 191473 12064379 ~ 12065037 (-) True G426061
CI01000304_11850324_11861609.mRNA mRNA downstream 7068 11849777 ~ 11861609 (-) True CI01000304_11850324_11861609
CI01000304_11845828_11848857.mRNA mRNA downstream 19514 11845614 ~ 11849163 (-) True CI01000304_11845828_11848857
CI01000304_11773915_11805873.mRNA mRNA downstream 60349 11772846 ~ 11808328 (-) True CI01000304_11773915_11805873
CI01000304_11769604_11771720.mRNA mRNA downstream 96957 11769542 ~ 11771720 (-) True CI01000304_11769604_11771720
CI01000304_11706322_11747949.mRNA mRNA downstream 120728 11706215 ~ 11747949 (-) True CI01000304_11706322_11747949
CI01000304_11897314_11913788.mRNA mRNA upstream 23573 11896479 ~ 11913839 (-) True CI01000304_11897314_11913788
CI01000304_11924813_11936040.mRNA mRNA upstream 51478 11924384 ~ 11936358 (-) True CI01000304_11924813_11936040
CI01000304_12076818_12085420.mRNA mRNA upstream 203649 12076555 ~ 12085420 (-) True CI01000304_12076818_12085420
CI01000304_12111812_12118998.mRNA mRNA upstream 238613 12111519 ~ 12120243 (-) True CI01000304_12111812_12118998
CI01000304_12123700_12132292.mRNA mRNA upstream 250503 12123409 ~ 12132506 (-) True CI01000304_12123700_12132292
TU488239 other downstream 511531 11354883 ~ 11357146 (-) False G425194
TU488240 other downstream 511531 11354883 ~ 11357146 (-) True G425194
TU487810 other downstream 1326012 10444355 ~ 10542665 (-) True G424808
TU487433 other downstream 1675782 10192696 ~ 10192895 (-) True G424459
TU487428 other downstream 1704347 10153446 ~ 10164330 (-) False G424458
TU489285 other upstream 463795 12336701 ~ 12340228 (-) True G426106
TU489325 other upstream 685948 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998
TU489324 other upstream 686116 12559022 ~ 12560135 (-) True CI01000304_12559311_12559998
TU489350 other upstream 823092 12719497 ~ 12805926 (-) True G426147
TU490328 other upstream 1634735 13507641 ~ 13507922 (-) True G427057

Expression Profile


TU488688 Expression in PRJCA010000

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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TU488688 Expression in each Bioproject

Bar chart with 44 bars.
TU488688 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Homologous


species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU11968 True 1759 lncRNA 0.40 2 NC_053112.1 30424606 ~ 30426457 (+)
tiger barb (Puntius tetrazona) TU11968 True 2280 lncRNA 0.47 3 NC_056699.1 30943498 ~ 30957486 (-)
mexican tetra (Astyanax mexicanus) TU11968 False 1259 lncRNA 0.37 5 NC_035898.1 7894388 ~ 7896904 (+)