RNA id: TU489229


Basic Information

Item Value
RNA id TU489229
length 303
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id G426052
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12043458 ~ 12044561 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCTGATGTCTCCGCTGCGGTGTACCACTGCAGTGATGTGACCTTCACTCTCCTCTGCAGTCATAACAGCCTGTTTAAACTGCACCTTTGGCAAGTCTGAAATGGAGTCGTTGATAAAGATGGTGACTTTTGCCGGCTCTCCCAGAATTCCATTGGAGGGCATCTGGAGAATAAGCTCAAATCTCTCTGTTCCTTCCAAAACGGGCTGGCCTAGGTCATCCAGGATGGTGACTCGGACCATCTGCATGCTCACACCCGGTGCAAAGTCCACGTTTCTGCTGATTCCCACATAGTCTACCCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489162 lncRNA downstream 57763 11985328 ~ 11985695 (-) True G425993
TU489161 lncRNA downstream 58543 11984617 ~ 11984915 (-) True G425992
TU488690 lncRNA downstream 152225 11890960 ~ 11891233 (-) True G425582
TU488656 lncRNA downstream 340078 11701164 ~ 11703380 (-) True G425550
TU488655 lncRNA downstream 345060 11696594 ~ 11698398 (-) True G425549
TU489239 lncRNA upstream 19818 12064379 ~ 12065037 (-) True G426061
TU489199 lncRNA upstream 23467 12068028 ~ 12068400 (-) True G426025
TU489243 lncRNA upstream 59883 12104444 ~ 12104665 (-) True G426065
TU489249 lncRNA upstream 100494 12145055 ~ 12145359 (-) True G426071
TU489271 lncRNA upstream 227227 12271788 ~ 12271991 (-) True G426092
CI01000304_11924813_11936040.mRNA mRNA downstream 107100 11924384 ~ 11936358 (-) True CI01000304_11924813_11936040
CI01000304_11897314_11913788.mRNA mRNA downstream 129619 11896479 ~ 11913839 (-) True CI01000304_11897314_11913788
CI01000304_11850324_11861609.mRNA mRNA downstream 181849 11849777 ~ 11861609 (-) True CI01000304_11850324_11861609
CI01000304_11845828_11848857.mRNA mRNA downstream 194295 11845614 ~ 11849163 (-) True CI01000304_11845828_11848857
CI01000304_11773915_11805873.mRNA mRNA downstream 235130 11772846 ~ 11808328 (-) True CI01000304_11773915_11805873
CI01000304_12076818_12085420.mRNA mRNA upstream 31994 12076555 ~ 12085420 (-) True CI01000304_12076818_12085420
CI01000304_12111812_12118998.mRNA mRNA upstream 66958 12111519 ~ 12120243 (-) True CI01000304_12111812_12118998
CI01000304_12123700_12132292.mRNA mRNA upstream 78848 12123409 ~ 12132506 (-) True CI01000304_12123700_12132292
CI01000304_12166589_12192298.mRNA mRNA upstream 121429 12165990 ~ 12192298 (-) True CI01000304_12166589_12192298
CI01000304_12249076_12249428.mRNA mRNA upstream 204005 12248566 ~ 12249722 (-) True CI01000304_12249076_12249428
TU488688 other downstream 170552 11868677 ~ 11872906 (-) True G425580
TU488239 other downstream 686312 11354883 ~ 11357146 (-) False G425194
TU488240 other downstream 686312 11354883 ~ 11357146 (-) True G425194
TU487810 other downstream 1500793 10444355 ~ 10542665 (-) True G424808
TU487433 other downstream 1850563 10192696 ~ 10192895 (-) True G424459
TU489285 other upstream 292140 12336701 ~ 12340228 (-) True G426106
TU489325 other upstream 514293 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998
TU489324 other upstream 514461 12559022 ~ 12560135 (-) True CI01000304_12559311_12559998
TU489350 other upstream 651437 12719497 ~ 12805926 (-) True G426147
TU490328 other upstream 1463080 13507641 ~ 13507922 (-) True G427057

Expression Profile