RNA id: TU489239


Basic Information

Item Value
RNA id TU489239
length 659
lncRNA type antisense_over
GC content 0.34
exon number 1
gene id G426061
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12064379 ~ 12065037 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCAAGGCCCAGTACATAAAAATGCATTTAGCATTGGAAATATGTAGCTGTGAACCAAGTACAAAAACACGATATCTCACCATAAATACCATTTCAAACATAAAGAATATTTCATCGTGCCCAAAATGTCGTGCTTGTGACTGTTAAATAGCCTCACAATCCTCTGTGAATATGAAAACAATCCACTGATTTTATTGCATAGCACATTTCTTTTTAAATATTATCAGCCTGATGAGGAATATAATTGTTAGGTGAAATGGATTTGACAATATGATGCTGGTTTTTCATAGATGAGTTCTTGTGGATATGTTTTTTGAATGCACACACAAACACTTGAACTTTGATGTGTCTAACAATGACGGTGAAGACAACAAAAATGTGATAGTTGATAGAACAAGTTGATAGAAATTGGTCTGGAAAAAAACAACTGCAAGAGATTCAACCGCAAAATACAGTGAAACACAAATGTGGAAATCTGAGGGATTTCCCGTGTCACAGTTTTCCCCTTATATTAAAACAACACTCAATGAGATAAGACGGCAATATTTAATACATGCAGCTCTCTGAATACTAACCCTTAAATTATAACAAACAAATATTAATTAAAACAGCAGCAACTACAGTATCTCACAAAAGTGAGTACACCCCTCACATTTCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489229 lncRNA downstream 19818 12043458 ~ 12044561 (-) True G426052
TU489162 lncRNA downstream 78684 11985328 ~ 11985695 (-) True G425993
TU489161 lncRNA downstream 79464 11984617 ~ 11984915 (-) True G425992
TU488690 lncRNA downstream 173146 11890960 ~ 11891233 (-) True G425582
TU488656 lncRNA downstream 360999 11701164 ~ 11703380 (-) True G425550
TU489199 lncRNA upstream 2991 12068028 ~ 12068400 (-) True G426025
TU489243 lncRNA upstream 39407 12104444 ~ 12104665 (-) True G426065
TU489249 lncRNA upstream 80018 12145055 ~ 12145359 (-) True G426071
TU489271 lncRNA upstream 206751 12271788 ~ 12271991 (-) True G426092
TU489282 lncRNA upstream 231519 12296556 ~ 12296831 (-) True G426103
CI01000304_11924813_11936040.mRNA mRNA downstream 128021 11924384 ~ 11936358 (-) True CI01000304_11924813_11936040
CI01000304_11897314_11913788.mRNA mRNA downstream 150540 11896479 ~ 11913839 (-) True CI01000304_11897314_11913788
CI01000304_11850324_11861609.mRNA mRNA downstream 202770 11849777 ~ 11861609 (-) True CI01000304_11850324_11861609
CI01000304_11845828_11848857.mRNA mRNA downstream 215216 11845614 ~ 11849163 (-) True CI01000304_11845828_11848857
CI01000304_11773915_11805873.mRNA mRNA downstream 256051 11772846 ~ 11808328 (-) True CI01000304_11773915_11805873
CI01000304_12076818_12085420.mRNA mRNA upstream 11518 12076555 ~ 12085420 (-) True CI01000304_12076818_12085420
CI01000304_12111812_12118998.mRNA mRNA upstream 46482 12111519 ~ 12120243 (-) True CI01000304_12111812_12118998
CI01000304_12123700_12132292.mRNA mRNA upstream 58372 12123409 ~ 12132506 (-) True CI01000304_12123700_12132292
CI01000304_12166589_12192298.mRNA mRNA upstream 100953 12165990 ~ 12192298 (-) True CI01000304_12166589_12192298
CI01000304_12249076_12249428.mRNA mRNA upstream 183529 12248566 ~ 12249722 (-) True CI01000304_12249076_12249428
TU488688 other downstream 191473 11868677 ~ 11872906 (-) True G425580
TU488239 other downstream 707233 11354883 ~ 11357146 (-) False G425194
TU488240 other downstream 707233 11354883 ~ 11357146 (-) True G425194
TU487810 other downstream 1521714 10444355 ~ 10542665 (-) True G424808
TU487433 other downstream 1871484 10192696 ~ 10192895 (-) True G424459
TU489285 other upstream 271664 12336701 ~ 12340228 (-) True G426106
TU489325 other upstream 493817 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998
TU489324 other upstream 493985 12559022 ~ 12560135 (-) True CI01000304_12559311_12559998
TU489350 other upstream 630961 12719497 ~ 12805926 (-) True G426147
TU490328 other upstream 1442604 13507641 ~ 13507922 (-) True G427057

Expression Profile