RNA id: TU489271


Basic Information

Item Value
RNA id TU489271
length 204
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G426092
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12271788 ~ 12271991 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCATCCTTTATGTTTTAGGGAAGAAAGTGTGAACTAGAATTGTACCAGACTTTTGGCTGGAGAGGTAATGTTGATTGAAAGAATAAGGAAATTATTCAGAGTTTGAATAAATATTTCCATAAAAACATACCGTTACTAAAATGTTTTCCTACGTAAAATGTATAAATGTCCACAATTTCAAGTATCACACACATCAGAAATGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489249 lncRNA downstream 126429 12145055 ~ 12145359 (-) True G426071
TU489243 lncRNA downstream 167123 12104444 ~ 12104665 (-) True G426065
TU489199 lncRNA downstream 203388 12068028 ~ 12068400 (-) True G426025
TU489239 lncRNA downstream 206751 12064379 ~ 12065037 (-) True G426061
TU489229 lncRNA downstream 227227 12043458 ~ 12044561 (-) True G426052
TU489282 lncRNA upstream 24565 12296556 ~ 12296831 (-) True G426103
TU489190 lncRNA upstream 41636 12313627 ~ 12316312 (-) True G426016
TU489291 lncRNA upstream 90727 12362718 ~ 12363607 (-) True G426110
TU489294 lncRNA upstream 94243 12366234 ~ 12366809 (-) True G426113
TU489295 lncRNA upstream 95365 12367356 ~ 12367911 (-) True G426114
CI01000304_12254455_12256896.mRNA mRNA downstream 13677 12254112 ~ 12258111 (-) True CI01000304_12254455_12256896
CI01000304_12249076_12249428.mRNA mRNA downstream 22066 12248566 ~ 12249722 (-) True CI01000304_12249076_12249428
CI01000304_12166589_12192298.mRNA mRNA downstream 79490 12165990 ~ 12192298 (-) True CI01000304_12166589_12192298
CI01000304_12123700_12132292.mRNA mRNA downstream 139282 12123409 ~ 12132506 (-) True CI01000304_12123700_12132292
CI01000304_12111812_12118998.mRNA mRNA downstream 151545 12111519 ~ 12120243 (-) True CI01000304_12111812_12118998
CI01000304_12305300_12310341.mRNA mRNA upstream 31629 12303620 ~ 12310341 (-) True CI01000304_12305300_12310341
CI01000304_12409495_12416078.mRNA mRNA upstream 136906 12408897 ~ 12416078 (-) True CI01000304_12409495_12416078
CI01000304_12442703_12460793.mRNA mRNA upstream 170705 12442696 ~ 12461728 (-) True CI01000304_12442703_12460793
CI01000304_12552338_12553936.mRNA mRNA upstream 280289 12552280 ~ 12553936 (-) True CI01000304_12552338_12553936
CI01000304_12555015_12556002.mRNA mRNA upstream 282735 12554726 ~ 12556002 (-) True CI01000304_12555015_12556002
TU488688 other downstream 398882 11868677 ~ 11872906 (-) True G425580
TU488239 other downstream 914642 11354883 ~ 11357146 (-) False G425194
TU488240 other downstream 914642 11354883 ~ 11357146 (-) True G425194
TU487810 other downstream 1729123 10444355 ~ 10542665 (-) True G424808
TU487433 other downstream 2078893 10192696 ~ 10192895 (-) True G424459
TU489285 other upstream 64710 12336701 ~ 12340228 (-) True G426106
TU489325 other upstream 286863 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998
TU489324 other upstream 287031 12559022 ~ 12560135 (-) True CI01000304_12559311_12559998
TU489350 other upstream 424007 12719497 ~ 12805926 (-) True G426147
TU490328 other upstream 1235650 13507641 ~ 13507922 (-) True G427057

Expression Profile