RNA id: TU489190


Basic Information

Item Value
RNA id TU489190
length 765
lncRNA type antisense_over
GC content 0.50
exon number 5
gene id G426016
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12313627 ~ 12316312 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTGTCTCCACAAAGTTGGCCACCTGGCCGTCGTCATTTGTGCCTCTGACATTGAAGCGTGTGCCTGCTCTCTCTGAGCTGAGACGAGAGATCACGCAAGCTTTTGCCTGTTTGTGCCCGGCATAGATGGTGCGGATCTCCACACCACCACACATTAACCTCAGCAGCCAGTCATCACAATTCACCCCATAATGCTTGAGATGGAGATGGAGGGACTGATTCCAGAAAAAACGATTGTCTGATATGTCTTCTCTGATCCTGCGGTGTGCGTTCAAGCTGAGGTCCAGACTCACTCCAGTGGAGGACCAGGCAAAATAGAAGTTCCCAGAGTTTAAGATTTTCCTGACATCAGCGATCCGGTCCTCATCCGAGGGGTCATTCTTCAGAGAGACGAAGTCTGTGCCTGTTACCCGAAAAACTTCTGAATCCTGGACTTTTCCAACTGAACTGCAGCCAGTTACGACCACCAGGCTGTGCAGCATAGAATCTCCAAGGTTAAGACGAAGAACTCCCAGTATCCCATAAGCATCCAGCATCTTGGTGTATGCTGTTTTGATGGTCTCTTTCTCTGCCGCCGACAGTACAGCAACAGCTCCAGACTCAAACATCAGGCATTCCTCTCGATTTCTGGTCTCCACGATCACACTGTATGGAGGTGGATCCAGTTTATGATAAATACGATAACCTTTACTGAATGCCATGGCTCGACACAACCGGTTTCAGTCCTGTCAGTGTTGTGTCTGTCTTCCCCCGGTTGGTTGTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489282 lncRNA downstream 16796 12296556 ~ 12296831 (-) True G426103
TU489271 lncRNA downstream 41636 12271788 ~ 12271991 (-) True G426092
TU489249 lncRNA downstream 168268 12145055 ~ 12145359 (-) True G426071
TU489243 lncRNA downstream 208962 12104444 ~ 12104665 (-) True G426065
TU489199 lncRNA downstream 245227 12068028 ~ 12068400 (-) True G426025
TU489291 lncRNA upstream 46406 12362718 ~ 12363607 (-) True G426110
TU489294 lncRNA upstream 49922 12366234 ~ 12366809 (-) True G426113
TU489295 lncRNA upstream 51044 12367356 ~ 12367911 (-) True G426114
TU489296 lncRNA upstream 53029 12369341 ~ 12369624 (-) True G426115
TU489297 lncRNA upstream 53476 12369788 ~ 12370134 (-) True G426116
CI01000304_12305300_12310341.mRNA mRNA downstream 3286 12303620 ~ 12310341 (-) True CI01000304_12305300_12310341
CI01000304_12254455_12256896.mRNA mRNA downstream 55516 12254112 ~ 12258111 (-) True CI01000304_12254455_12256896
CI01000304_12249076_12249428.mRNA mRNA downstream 63905 12248566 ~ 12249722 (-) True CI01000304_12249076_12249428
CI01000304_12166589_12192298.mRNA mRNA downstream 121329 12165990 ~ 12192298 (-) True CI01000304_12166589_12192298
CI01000304_12123700_12132292.mRNA mRNA downstream 181121 12123409 ~ 12132506 (-) True CI01000304_12123700_12132292
CI01000304_12409495_12416078.mRNA mRNA upstream 92585 12408897 ~ 12416078 (-) True CI01000304_12409495_12416078
CI01000304_12442703_12460793.mRNA mRNA upstream 126384 12442696 ~ 12461728 (-) True CI01000304_12442703_12460793
CI01000304_12552338_12553936.mRNA mRNA upstream 235968 12552280 ~ 12553936 (-) True CI01000304_12552338_12553936
CI01000304_12555015_12556002.mRNA mRNA upstream 238414 12554726 ~ 12556002 (-) True CI01000304_12555015_12556002
CI01000304_12558231_12558565.mRNA mRNA upstream 241774 12558086 ~ 12558590 (-) False CI01000304_12558231_12558565
TU488688 other downstream 440721 11868677 ~ 11872906 (-) True G425580
TU488239 other downstream 956481 11354883 ~ 11357146 (-) False G425194
TU488240 other downstream 956481 11354883 ~ 11357146 (-) True G425194
TU487810 other downstream 1770962 10444355 ~ 10542665 (-) True G424808
TU487433 other downstream 2120732 10192696 ~ 10192895 (-) True G424459
TU489285 other upstream 20389 12336701 ~ 12340228 (-) True G426106
TU489325 other upstream 242542 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998
TU489324 other upstream 242710 12559022 ~ 12560135 (-) True CI01000304_12559311_12559998
TU489350 other upstream 379686 12719497 ~ 12805926 (-) True G426147
TU490328 other upstream 1191329 13507641 ~ 13507922 (-) True G427057

Expression Profile