RNA id: TU489329


Basic Information

Item Value
RNA id TU489329
length 1439
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G426135
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12621467 ~ 12625378 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGTGGTAGTTTTTTTTTATTGCAAACTAGACCAAAAAAAAAAATTTACATATGAACAGTATTTATAGTATATAAAGCTTTTGATATTGAAGCAGGGGGAGGCACCCAAGAACAGATAGAGACCAATGTGAATGGTGCTACTTATATCACTGACACAGATCATACAGTTGGAGTCTCTGTCTGCTGAATGTCTTGTCATACACACTCTGTTTTGAACCATCACAATTGACAATGCAAAATCAGTTAACATACAAAACAAAAATGCAGCACTGCTTTTTGTGGTGTGTTTTATAGATAAAAAAATGGACACATTTGCAAGTTCAAATGGTAAAACCAAAATTGGACAAACTGTGAACTACAACATTGTTTAACTGAAGATGTGGCCCAGATCTGGATAAAGCTGAATAATCTGAAACCATCAGCAAAGTTAATGGAGTGTAAGAATGAAGAAGAATCATTTCTCCTTGCATGACATTAAGTATGAAGCAGCAGCATCAGTGTAAAGATATGGAACAAGTATACCTCTAAGAGATTTCTAATATTAGCCTATATTTTGGTCACAATGGACTCATCTCCCTGTCAGCATAACATTGTACATGCTTAAACAGAATTTAGCTACATCTAGCATTCGAGAAATACGATAACAGGATGCTATCTAATTTATTCATATTTTGAAAGTTTTGATTAGGTTGCTAGCTACTGGTCTATCAAGAACAAAGAAGATAATAATAGTGAAAATGACAAACTGTAGTGATGGGTAAGTTAAAAGCTATTTTGTCTCTTTTTTTTCTGCAGTTAATGCATACTGTATAATTATATCATAAATTCTGTTTATATATTTTCATATTTCTAGACCACCCTTCCACCCATATCCATAACCTCTACAAAGTTTGGCTCAGAGATAACATTTATTTTCCCAAATTGTTTACAGTCCTCGTTTAGAAGGAGGCACAAGGTGATCAGGAAGATCAGCAGGTAACTCGTGACCTTCCAGTTTAACCTTGATGAGGTGGTTAGCTAGGGCGAACTCCTCGTCGTCCAGGTACCCATCCTTATCCACATCAGCGAGCTTCCAGATTTTTCCTAGAACGTTGTTGGGCAGTTTGGATTTGACCATCTCCTTCTTGGCCATGGCACCAGAGACCTTCCCGTTGACAGGTGACAGGGTGTAGAAGATCTCGTCGTAAGTTGGCTTGTCTCTCGCCACTATCCACTCCAGCTCATCGATGCCTTCACTAGCACCCTCTCCATAGCCATGCCCGAAGGGTCCATTCATGGTGCCCTCAAAGGCACCACCCTGGACAGCCTGGCTGGGCATGGCAGCCTCCTCCTGCCGAACGAGGGTCATGAGTTTGGCAATGTCGTTGGCCAGCATGTCCTCTACTGCTTCTAGCAACTTGGGCTTCAATCCCTGAAACTTAGTGAAGTCCTGACCAGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489395 lncRNA downstream 31355 12589913 ~ 12590112 (-) True G426188
TU489391 lncRNA downstream 32247 12588923 ~ 12589220 (-) True G426184
TU489318 lncRNA downstream 62726 12558110 ~ 12558741 (-) True CI01000304_12558231_12558565
TU489341 lncRNA downstream 86263 12534071 ~ 12535204 (-) True G426142
TU489373 lncRNA downstream 125632 12495626 ~ 12495835 (-) True G426170
TU489349 lncRNA upstream 70620 12719497 ~ 12721126 (-) False G426147
TU490291 lncRNA upstream 470045 13095423 ~ 13095773 (-) True G427020
TU490294 lncRNA upstream 476067 13101445 ~ 13101719 (-) True G427023
TU490296 lncRNA upstream 479200 13104578 ~ 13104792 (-) True G427025
TU490313 lncRNA upstream 515455 13140833 ~ 13141045 (-) True G427042
CI01000304_12570121_12574061.mRNA mRNA downstream 47406 12570059 ~ 12574061 (-) True CI01000304_12570121_12574061
CI01000304_12559311_12559998.mRNA mRNA downstream 61469 12559232 ~ 12559998 (-) False CI01000304_12559311_12559998
CI01000304_12558231_12558565.mRNA mRNA downstream 62877 12558086 ~ 12558590 (-) False CI01000304_12558231_12558565
CI01000304_12555015_12556002.mRNA mRNA downstream 65465 12554726 ~ 12556002 (-) True CI01000304_12555015_12556002
CI01000304_12552338_12553936.mRNA mRNA downstream 67531 12552280 ~ 12553936 (-) True CI01000304_12552338_12553936
CI01000304_12687020_12696284.mRNA mRNA upstream 61079 12686457 ~ 12696284 (-) False CI01000304_12687020_12696284
CI01000304_12887576_12889393.mRNA mRNA upstream 261846 12887224 ~ 12889393 (-) False CI01000304_12887576_12889393
CI01000304_12953008_12953457.mRNA mRNA upstream 327326 12952704 ~ 12953480 (-) False CI01000304_12953008_12953457
CI01000304_13036242_13039203.mRNA mRNA upstream 409307 13034685 ~ 13039203 (-) False CI01000304_13036242_13039203
CI01000304_13068737_13075920.mRNA mRNA upstream 443124 13068502 ~ 13075920 (-) True CI01000304_13068737_13075920
TU489325 other downstream 61332 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998
TU489324 other downstream 61332 12559022 ~ 12560135 (-) True CI01000304_12559311_12559998
TU489285 other downstream 281239 12336701 ~ 12340228 (-) True G426106
TU488688 other downstream 748561 11868677 ~ 11872906 (-) True G425580
TU488240 other downstream 1264321 11354883 ~ 11357146 (-) True G425194
TU489350 other upstream 70620 12719497 ~ 12805926 (-) True G426147
TU490328 other upstream 882263 13507641 ~ 13507922 (-) True G427057
TU490473 other upstream 1306413 13931791 ~ 13950548 (-) False G427154
TU490643 other upstream 1564090 14189468 ~ 14208299 (-) False G427309
TU490767 other upstream 1643045 14268423 ~ 14269571 (-) True CI01000304_14265881_14269102

Expression Profile