RNA id: TU488994



Basic Information


Item Value
RNA id TU488994
length 634
lncRNA type antisense_over
GC content 0.37
exon number 1
gene id G425832
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12690429 ~ 12691062 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCCCTCTCAAAGTACCTCAAAAATTAAGACTGTATAGTGTTATATAGTTCAGAGTTAACAGGAAGAGGAAGAAAAGAGCCACAAAGAATATTTCTTTCCACATGTATGAGCTGATCTTGATTGGAGGGTGTATGCAAATCTCACCTTTACTTTCTGTTGGTGATGGTAAATTTGCCAGGCTATATGGACATGCATAGCACACCACTTTCCTGGTTTCTTTGGAGACAGAAAGACAAGGTAAGGTTTTTATGTTCATACATGACTAAAATCATGTTAGTTTAATTTTAATCACTTCTATAACAGAATATCGGGTACATCTGACAAGATTATCTACAATTTTATATAATACTGTTGAGCATTTTTAAAGTGAAATTTCAGTATCAAGTTTCTTTGCTTGTTCCCATAATTTAAGCATGGCTGCAAATTAATTAAGCAAAATGTCATTACAAAGTGTTTTCAGATAAGGGAGTCATATAGTGTCTCCTATAGACTCTGAGAGGAGACCGTTGAGTCCCAGCGCACAGCTAATTAAAGAGACTGTGGAGCTGAAGGCAGGTGCTCAGTGTAAGGTGGGATTAAACTGTAATGAGCTTTTACTCTATTTCCTGCATACTCCTGTGGGGAAACAAACTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU488993 lncRNA upstream 664 12689434 ~ 12689765 (+) True G425831
TU488979 lncRNA upstream 1353 12688849 ~ 12689076 (+) True G425817
TU488978 lncRNA upstream 1829 12686128 ~ 12688600 (+) True G425816
TU488992 lncRNA upstream 5503 12684657 ~ 12684926 (+) True G425830
TU488972 lncRNA upstream 96564 12591256 ~ 12593865 (+) True G425812
TU488998 lncRNA downstream 2022 12693084 ~ 12694418 (+) False G425835
TU488997 lncRNA downstream 3126 12694188 ~ 12694418 (+) True G425835
TU488996 lncRNA downstream 3556 12694618 ~ 12694890 (+) True G425834
TU489094 lncRNA downstream 198269 12889331 ~ 13036691 (+) True G425930
TU489487 lncRNA downstream 388610 13079672 ~ 13079904 (+) True G426266
CI01000304_12653236_12670625.mRNA mRNA upstream 19446 12652837 ~ 12670983 (+) True CI01000304_12653236_12670625
CI01000304_12601154_12621980.mRNA mRNA upstream 68436 12600836 ~ 12621993 (+) True CI01000304_12601154_12621980
CI01000304_12583384_12588591.mRNA mRNA upstream 101365 12583384 ~ 12589064 (+) False CI01000304_12583384_12588591
CI01000304_12569155_12569469.mRNA mRNA upstream 120695 12569155 ~ 12569734 (+) True CI01000304_12569155_12569469
CI01000304_12556446_12557806.mRNA mRNA upstream 132353 12556446 ~ 12558076 (+) True CI01000304_12556446_12557806
CI01000304_12718988_12729338.mRNA mRNA downstream 27705 12718767 ~ 12729850 (+) True CI01000304_12718988_12729338
CI01000304_12744525_12773999.mRNA mRNA downstream 52997 12744059 ~ 12774312 (+) True CI01000304_12744525_12773999
CI01000304_12819247_12825161.mRNA mRNA downstream 126917 12817979 ~ 12825313 (+) True CI01000304_12819247_12825161
CI01000304_12828251_12839287.mRNA mRNA downstream 136252 12827314 ~ 12839991 (+) True CI01000304_12828251_12839287
CI01000304_13331382_13338351.mRNA mRNA downstream 640320 13331382 ~ 13339248 (+) True CI01000304_13331382_13338351
TU488854 other upstream 251343 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other upstream 251343 12436554 ~ 12436605 (+) True G425718
TU488852 other upstream 251343 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU487556 other upstream 2134725 10555614 ~ 10555704 (+) True G424559
TU487195 other upstream 2497534 10189315 ~ 10189404 (+) True G424251
TU489575 other downstream 865389 13556451 ~ 13573943 (+) True G426349
TU489538 other downstream 1638986 14330048 ~ 14330886 (+) True G426312
TU490061 other downstream 2257828 14948890 ~ 14950592 (+) True G426828
TU491290 other downstream 3194392 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 3392168 16083230 ~ 16083714 (+) True G428017

Expression Profile