RNA id: TU488996


Basic Information

Item Value
RNA id TU488996
length 273
lncRNA type antisense_over
GC content 0.64
exon number 1
gene id G425834
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12694618 ~ 12694890 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGGCACTCCCAGCTGGGTGTCCGGGGACCGGCAGAGTGTTTGAGGTGAGAGGAGGAGGTGGAGGCAGAGCAGCAGGCGACGCAAACATATTGGTGTGATGAGGAAGAGTGGAGGGTGGTAGGGAGGGGGGGAAGGTGTGCGAAGCCGTAGGGTTCGCTGGCAGGGGCAGGGGGAAGGTCGCTGCTGCCCCAGTGGGGGCAGGTTGGTGATGGTGCAGATGAGGGACTGGAGAGGGGCCCGGGGGCTTCCCTGGAGTGCTGCTTCGACTACTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU488998 lncRNA upstream 200 12693084 ~ 12694418 (+) False G425835
TU488997 lncRNA upstream 200 12694188 ~ 12694418 (+) True G425835
TU488994 lncRNA upstream 3556 12690429 ~ 12691062 (+) True G425832
TU488993 lncRNA upstream 4853 12689434 ~ 12689765 (+) True G425831
TU488979 lncRNA upstream 5542 12688849 ~ 12689076 (+) True G425817
TU489094 lncRNA downstream 194441 12889331 ~ 13036691 (+) True G425930
TU489487 lncRNA downstream 384782 13079672 ~ 13079904 (+) True G426266
TU489497 lncRNA downstream 424019 13118909 ~ 13119304 (+) False G426274
TU489495 lncRNA downstream 424053 13118943 ~ 13119304 (+) False G426274
TU489499 lncRNA downstream 424053 13118943 ~ 13119261 (+) True G426274
CI01000304_12653236_12670625.mRNA mRNA upstream 23635 12652837 ~ 12670983 (+) True CI01000304_12653236_12670625
CI01000304_12601154_12621980.mRNA mRNA upstream 72625 12600836 ~ 12621993 (+) True CI01000304_12601154_12621980
CI01000304_12583384_12588591.mRNA mRNA upstream 105554 12583384 ~ 12589064 (+) False CI01000304_12583384_12588591
CI01000304_12569155_12569469.mRNA mRNA upstream 124884 12569155 ~ 12569734 (+) True CI01000304_12569155_12569469
CI01000304_12556446_12557806.mRNA mRNA upstream 136542 12556446 ~ 12558076 (+) True CI01000304_12556446_12557806
CI01000304_12718988_12729338.mRNA mRNA downstream 23877 12718767 ~ 12729850 (+) True CI01000304_12718988_12729338
CI01000304_12744525_12773999.mRNA mRNA downstream 49169 12744059 ~ 12774312 (+) True CI01000304_12744525_12773999
CI01000304_12819247_12825161.mRNA mRNA downstream 123089 12817979 ~ 12825313 (+) True CI01000304_12819247_12825161
CI01000304_12828251_12839287.mRNA mRNA downstream 132424 12827314 ~ 12839991 (+) True CI01000304_12828251_12839287
CI01000304_13331382_13338351.mRNA mRNA downstream 636492 13331382 ~ 13339248 (+) True CI01000304_13331382_13338351
TU488854 other upstream 255532 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other upstream 255532 12436554 ~ 12436605 (+) True G425718
TU488852 other upstream 255532 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU487556 other upstream 2138914 10555614 ~ 10555704 (+) True G424559
TU487195 other upstream 2501723 10189315 ~ 10189404 (+) True G424251
TU489575 other downstream 861561 13556451 ~ 13573943 (+) True G426349
TU489538 other downstream 1635158 14330048 ~ 14330886 (+) True G426312
TU490061 other downstream 2254000 14948890 ~ 14950592 (+) True G426828
TU491290 other downstream 3190564 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 3388340 16083230 ~ 16083714 (+) True G428017

Expression Profile