RNA id: TU490294


Basic Information

Item Value
RNA id TU490294
length 275
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G427023
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 13101445 ~ 13101719 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGCATTTTCCACGTTTATAGCGGTTGTGCCGAATGACCTGATGTTTCGGGACATGCGTATGAGCAAGTGAAAACATGAATTTTTCAAATAGTTAAGAGAAAGTTAGTTACTTTGCTTCATGACCATGTGGTCCTTTGCAGGTGTCTGAATGATGTCACATCCTGTCACATGATATTGACTGCATGACTTGATCCAAAATGGTCCCTTTATATTGGTTACTCTGAATGACATCATTGAAATTCATTTTTCTGGACATTCTTTCTCATAACAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU490291 lncRNA downstream 5672 13095423 ~ 13095773 (-) True G427020
TU489349 lncRNA downstream 380319 12719497 ~ 12721126 (-) False G426147
TU489327 lncRNA downstream 476067 12621467 ~ 12625378 (-) False G426135
TU489329 lncRNA downstream 476067 12621467 ~ 12625378 (-) True G426135
TU489395 lncRNA downstream 511333 12589913 ~ 12590112 (-) True G426188
TU490296 lncRNA upstream 2859 13104578 ~ 13104792 (-) True G427025
TU490313 lncRNA upstream 39114 13140833 ~ 13141045 (-) True G427042
TU490275 lncRNA upstream 190536 13292255 ~ 13292268 (-) True G427004
TU490261 lncRNA upstream 231618 13333337 ~ 13364683 (-) True G426990
TU490280 lncRNA upstream 271367 13373086 ~ 13373659 (-) True G427009
CI01000304_13068737_13075920.mRNA mRNA downstream 25525 13068502 ~ 13075920 (-) True CI01000304_13068737_13075920
CI01000304_13036242_13039203.mRNA mRNA downstream 62242 13034685 ~ 13039203 (-) False CI01000304_13036242_13039203
CI01000304_12953008_12953457.mRNA mRNA downstream 147965 12952704 ~ 12953480 (-) False CI01000304_12953008_12953457
CI01000304_12887576_12889393.mRNA mRNA downstream 212052 12887224 ~ 12889393 (-) False CI01000304_12887576_12889393
CI01000304_12687020_12696284.mRNA mRNA downstream 405161 12686457 ~ 12696284 (-) False CI01000304_12687020_12696284
CI01000304_13185020_13207799.mRNA mRNA upstream 82499 13184218 ~ 13207799 (-) True CI01000304_13185020_13207799
CI01000304_13210441_13259571.mRNA mRNA upstream 108009 13209728 ~ 13262698 (-) True CI01000304_13210441_13259571
CI01000304_13276793_13278145.mRNA mRNA upstream 174528 13276247 ~ 13278145 (-) True CI01000304_13276793_13278145
CI01000304_13342458_13361412.mRNA mRNA upstream 240701 13342420 ~ 13361412 (-) True CI01000304_13342458_13361412
CI01000304_13367200_13384209.mRNA mRNA upstream 264828 13366547 ~ 13384538 (-) False CI01000304_13367200_13384209
TU489350 other downstream 62130 12719497 ~ 12805926 (-) True G426147
TU489325 other downstream 541310 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998
TU489324 other downstream 541310 12559022 ~ 12560135 (-) True CI01000304_12559311_12559998
TU489285 other downstream 761217 12336701 ~ 12340228 (-) True G426106
TU488688 other downstream 1228539 11868677 ~ 11872906 (-) True G425580
TU490328 other upstream 405922 13507641 ~ 13507922 (-) True G427057
TU490473 other upstream 830072 13931791 ~ 13950548 (-) False G427154
TU490643 other upstream 1087749 14189468 ~ 14208299 (-) False G427309
TU490767 other upstream 1166704 14268423 ~ 14269571 (-) True CI01000304_14265881_14269102
TU490754 other upstream 1181952 14283671 ~ 14286873 (-) True G427362

Expression Profile