RNA id: TU489499


Basic Information

Item Value
RNA id TU489499
length 319
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G426274
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 13118909 ~ 13119304 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGTTATCTTAGATTTTTCCCTGTTTAAATAAACAAAATTGTGACGGTCTGATAGATACGACCTAAACCACCATAATGCCTGTCCCTGGATACCAGTGTAATTCTGTAGTCGATCTAGGAGTATTTTATGATCTATAGTGTCGAACGCAGCACTGAGATCAAGTAACACTAGTATTGAGATACAGCCTTGGTCAGAAGCTAGAAGTAAGTCATTTGTAATTTTAACGAGCGCAGTTTCTGTGCTATGATGAGGCCTGAATCCTGACTGAAATTTTTCATAGATAGCATTTTTTTGCAAGAAGGAGCACAATTGGACCGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489487 lncRNA upstream 39039 13079672 ~ 13079904 (+) True G426266
TU489094 lncRNA upstream 82252 12889331 ~ 13036691 (+) True G425930
TU488996 lncRNA upstream 424053 12694618 ~ 12694890 (+) True G425834
TU488998 lncRNA upstream 424525 12693084 ~ 12694418 (+) False G425835
TU489503 lncRNA downstream 4196 13123457 ~ 13123685 (+) True G426278
TU489513 lncRNA downstream 14887 13134148 ~ 13134657 (+) True G426288
TU489514 lncRNA downstream 16819 13136080 ~ 13136323 (+) True G426289
TU489515 lncRNA downstream 18278 13137539 ~ 13137746 (+) True G426290
TU489525 lncRNA downstream 41472 13160733 ~ 13160945 (+) True G426300
CI01000304_12828251_12839287.mRNA mRNA upstream 278952 12827314 ~ 12839991 (+) True CI01000304_12828251_12839287
CI01000304_12819247_12825161.mRNA mRNA upstream 293630 12817979 ~ 12825313 (+) True CI01000304_12819247_12825161
CI01000304_12744525_12773999.mRNA mRNA upstream 344631 12744059 ~ 12774312 (+) True CI01000304_12744525_12773999
CI01000304_12718988_12729338.mRNA mRNA upstream 389093 12718767 ~ 12729850 (+) True CI01000304_12718988_12729338
CI01000304_12653236_12670625.mRNA mRNA upstream 447960 12652837 ~ 12670983 (+) True CI01000304_12653236_12670625
CI01000304_13331382_13338351.mRNA mRNA downstream 212121 13331382 ~ 13339248 (+) True CI01000304_13331382_13338351
CI01000304_13435609_13438459.mRNA mRNA downstream 316246 13435507 ~ 13438730 (+) True CI01000304_13435609_13438459
CI01000304_13578347_13595075.mRNA mRNA downstream 458788 13578049 ~ 13595097 (+) False CI01000304_13578347_13595075
CI01000304_13613026_13686604.mRNA mRNA downstream 493765 13613026 ~ 13686604 (+) True CI01000304_13613026_13686604
CI01000304_13731299_13731640.mRNA mRNA downstream 611981 13731242 ~ 13731650 (+) True CI01000304_13731299_13731640
TU488854 other upstream 679857 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other upstream 679857 12436554 ~ 12436605 (+) True G425718
TU488852 other upstream 679857 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU487556 other upstream 2563239 10555614 ~ 10555704 (+) True G424559
TU487195 other upstream 2926048 10189315 ~ 10189404 (+) True G424251
TU489575 other downstream 437190 13556451 ~ 13573943 (+) True G426349
TU489538 other downstream 1210787 14330048 ~ 14330886 (+) True G426312
TU490061 other downstream 1829629 14948890 ~ 14950592 (+) True G426828
TU491290 other downstream 2766193 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 2963969 16083230 ~ 16083714 (+) True G428017

Expression Profile