RNA id: TCONS_00021929


Basic Information

Item Value
RNA id TCONS_00021929
length 1267
lncRNA type sense_over
GC content 0.51
exon number 8
gene id XLOC_009891
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23811554 ~ 23835922 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGGGCTCTGTCTGGGAGCCGCAGAGGAATGTCTGGCAGGACCAGCGCGCGGGTGCTGCTGTACCTCGGCTTGTGTCACCTTGCGCTCGGGGCAATGGTTCTGGCCTTCAGCTTCACCAGCCTCGCCTTCACCTCATCACCCCGGGTCAGACAGTCTTGCCCTTTTTGGGCTGGCTTTTTTGTAAGTTTTAAATGTTTTTTCTATCTCTCTGTCAAACAGGTAGTGGCGTCAGGAGTAGTAGGTGTGATATCATGGAGGAGGCCCTTCACTCTTGTCGTATGTGTCGCTGTTCATGCTGCTCTCTGCAGTGTGTGTGATTCTCAGTCTGGCTGGCTCCATGCTCTCATGTCAGAATGCACAGATGGTCAAATCTTATGTTGACTGTAAGTTCAGTGGTAATAAGGAAAATGTTAGGCAATTTGATATTTGGCTTAAAGTGGGAATGGTGCTCGTCTTCTTGTTCTTTTTCTTGTCATAAAGTATTATCTGTGTGTTTGTTCCAGGTGGAGAATCGTCTGTGTCTTTGCTGTGAGCCTAAGTCATGCTCTCTAAAGGAAGATGATACTCTAGTGCTCTACCAACATAAAGACTGCCATGCTGTGCGACACCAGCTTAAGGATCTGCTGTTTAGCGCATGTGGCCTGAGTATTCTGTCCACCATTATCTGCACTCTGTCCACGGTCACCTGCAGCATTCATATCTTCTCTCTTGACCTGCTGCATCTGCTGGCTCCTCATCGCTCTCGCTCCGTCAACCCAGAATGCACAACACCTCAAGATGCATTTCTCAGTAACATGATGGATTTCGAGGAATTTGTTCCACCCATTCCTCCACCACCTTACTACCCTCCTGAATACACTTGCAGCTCTGAGACTGATGCACAGAGTGTCACATATAATGGATCAATGGAGAGTCCAGTGCCTCTCTATCCAACCGACTGCCCTCCTCCTTATGAGGCAGTGATGGGTCAAAGGGCTCCTAGCCAGTGTCAATGGACAGTGGCTCTCTGTTGATGTCTGAGATTGTGGATATTCCAGATGACAGCTCCCCGTCTGAGGACTCCTGCCTCATGGAGGTTGGCGTTGGTGTTCGGGCCCGATCGCGGGGGGCCAGCGAGGGAGGGGAGGGGGGAGAGTGTGCCAACTTCCGCTCTTCCCCACAACATCCTGAAGGTATGGTGGCAGCTGCTACCGGACGACGCTGTTTCAGAGGCGAGAGATCCAACTCCTGCTCCTCCCCGAGCACATACAACACCTCTACCTACAG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019712 lncRNA upstream 514395 23294686 ~ 23297206 (+) True XLOC_009879
TCONS_00019708 lncRNA upstream 935506 22872860 ~ 22876095 (+) True XLOC_009877
TCONS_00021928 lncRNA upstream 1115105 22695226 ~ 22696496 (+) True XLOC_009875
TCONS_00021927 lncRNA upstream 1156514 22649863 ~ 22655087 (+) False XLOC_009874
TCONS_00021710 lncRNA upstream 1232275 22575355 ~ 22579326 (+) True XLOC_009872
TCONS_00019740 lncRNA downstream 92336 23914082 ~ 23915127 (+) True XLOC_009894
TCONS_00019749 lncRNA downstream 125543 23947289 ~ 23948093 (+) True XLOC_009897
TCONS_00019752 lncRNA downstream 139163 23960909 ~ 23962471 (+) False XLOC_009898
TCONS_00019763 lncRNA downstream 157634 23979380 ~ 23980174 (+) True XLOC_009900
TCONS_00021711 lncRNA downstream 163009 23984755 ~ 23991159 (+) False XLOC_009901
TCONS_00019730 mRNA upstream 1990 23799622 ~ 23809611 (+) True XLOC_009890
TCONS_00019729 mRNA upstream 7175 23796612 ~ 23804426 (+) False XLOC_009890
TCONS_00019726 mRNA upstream 91952 23598908 ~ 23719649 (+) False XLOC_009888
TCONS_00019727 mRNA upstream 92966 23600041 ~ 23718635 (+) True XLOC_009888
TCONS_00019725 mRNA upstream 253887 23531583 ~ 23557714 (+) True XLOC_009887
TCONS_00019733 mRNA downstream 16101 23837847 ~ 23977525 (+) False XLOC_009892
TCONS_00019734 mRNA downstream 16172 23837918 ~ 23872794 (+) False XLOC_009892
TCONS_00019736 mRNA downstream 16175 23837921 ~ 23875475 (+) False XLOC_009892
TCONS_00019737 mRNA downstream 69697 23891443 ~ 23902439 (+) True XLOC_009893
TCONS_00019738 mRNA downstream 92197 23913943 ~ 23916263 (+) False XLOC_009894
TCONS_00019728 other upstream 204249 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019718 other upstream 412441 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019682 other upstream 2107922 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019667 other upstream 2898117 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019658 other upstream 3306736 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019735 other downstream 16174 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019751 other downstream 139125 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019767 other downstream 694346 24516092 ~ 24517092 (+) False XLOC_009904
TCONS_00019777 other downstream 1059376 24881122 ~ 24881218 (+) True XLOC_009911
TCONS_00019779 other downstream 1076425 24898171 ~ 24898253 (+) True XLOC_009912