RNA id: TU489525


Basic Information

Item Value
RNA id TU489525
length 213
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G426300
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 13160733 ~ 13160945 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAGTTTTATTTTTAAGAGACCAAATCCTGTAATACACCACAGATATTGAGAGGGACACATCAGATGCAGATTCTTGGCACATTATGCTTTTTCCAATAGCGCATTCTTAAATCATAACATCAACAACCAGTCCTTAATGTTTACATCGTTTACAGCAAATAACTATACAATATGGCCACCAACCTGTATGACAGGAGTCTGCGACAGTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489515 lncRNA upstream 22987 13137539 ~ 13137746 (+) True G426290
TU489514 lncRNA upstream 24410 13136080 ~ 13136323 (+) True G426289
TU489513 lncRNA upstream 26076 13134148 ~ 13134657 (+) True G426288
TU489503 lncRNA upstream 37048 13123457 ~ 13123685 (+) True G426278
TU489495 lncRNA upstream 41429 13118943 ~ 13119304 (+) False G426274
TU489618 lncRNA downstream 7076 13168021 ~ 13168267 (+) True G426392
TU489619 lncRNA downstream 9245 13170190 ~ 13170485 (+) True G426393
TU489623 lncRNA downstream 15461 13176406 ~ 13176636 (+) True G426397
TU489625 lncRNA downstream 19429 13180374 ~ 13180586 (+) True G426399
TU489626 lncRNA downstream 20688 13181633 ~ 13181861 (+) True G426400
CI01000304_12828251_12839287.mRNA mRNA upstream 320742 12827314 ~ 12839991 (+) True CI01000304_12828251_12839287
CI01000304_12819247_12825161.mRNA mRNA upstream 335420 12817979 ~ 12825313 (+) True CI01000304_12819247_12825161
CI01000304_12744525_12773999.mRNA mRNA upstream 386421 12744059 ~ 12774312 (+) True CI01000304_12744525_12773999
CI01000304_12718988_12729338.mRNA mRNA upstream 430883 12718767 ~ 12729850 (+) True CI01000304_12718988_12729338
CI01000304_12653236_12670625.mRNA mRNA upstream 489750 12652837 ~ 12670983 (+) True CI01000304_12653236_12670625
CI01000304_13331382_13338351.mRNA mRNA downstream 170437 13331382 ~ 13339248 (+) True CI01000304_13331382_13338351
CI01000304_13435609_13438459.mRNA mRNA downstream 274562 13435507 ~ 13438730 (+) True CI01000304_13435609_13438459
CI01000304_13578347_13595075.mRNA mRNA downstream 417104 13578049 ~ 13595097 (+) False CI01000304_13578347_13595075
CI01000304_13613026_13686604.mRNA mRNA downstream 452081 13613026 ~ 13686604 (+) True CI01000304_13613026_13686604
CI01000304_13731299_13731640.mRNA mRNA downstream 570297 13731242 ~ 13731650 (+) True CI01000304_13731299_13731640
TU488854 other upstream 721647 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other upstream 721647 12436554 ~ 12436605 (+) True G425718
TU488852 other upstream 721647 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU487556 other upstream 2605029 10555614 ~ 10555704 (+) True G424559
TU487195 other upstream 2967838 10189315 ~ 10189404 (+) True G424251
TU489575 other downstream 395506 13556451 ~ 13573943 (+) True G426349
TU489538 other downstream 1169103 14330048 ~ 14330886 (+) True G426312
TU490061 other downstream 1787945 14948890 ~ 14950592 (+) True G426828
TU491290 other downstream 2724509 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 2922285 16083230 ~ 16083714 (+) True G428017

Expression Profile