RNA id: TU489625


Basic Information

Item Value
RNA id TU489625
length 213
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G426399
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 13180374 ~ 13180586 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTGGTTAAGAGCAATTTACTCTCTGAGGGGAACACTGAAAAGTAATACGCCATGTCAGCACTGGTAATTAAAGATTACAATGTATTTAAGTTAGCCTTGGAGTCATCAAAGATGGTCCCTCTTTCTGGCAATGACAACAGGTCATTTTTTGTTGTATTTTTTAAATTGTTTCAATAACAAGGCCACTTATATAATGCAAAACAGATTCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489623 lncRNA upstream 3738 13176406 ~ 13176636 (+) True G426397
TU489619 lncRNA upstream 9889 13170190 ~ 13170485 (+) True G426393
TU489618 lncRNA upstream 12107 13168021 ~ 13168267 (+) True G426392
TU489525 lncRNA upstream 19429 13160733 ~ 13160945 (+) True G426300
TU489515 lncRNA upstream 42628 13137539 ~ 13137746 (+) True G426290
TU489626 lncRNA downstream 1047 13181633 ~ 13181861 (+) True G426400
TU489580 lncRNA downstream 30109 13210695 ~ 13214753 (+) True G426354
TU489658 lncRNA downstream 109139 13289725 ~ 13303597 (+) True G426432
TU489684 lncRNA downstream 192007 13372593 ~ 13372972 (+) True G426458
TU489685 lncRNA downstream 192517 13373103 ~ 13373384 (+) True G426459
CI01000304_12828251_12839287.mRNA mRNA upstream 340383 12827314 ~ 12839991 (+) True CI01000304_12828251_12839287
CI01000304_12819247_12825161.mRNA mRNA upstream 355061 12817979 ~ 12825313 (+) True CI01000304_12819247_12825161
CI01000304_12744525_12773999.mRNA mRNA upstream 406062 12744059 ~ 12774312 (+) True CI01000304_12744525_12773999
CI01000304_12718988_12729338.mRNA mRNA upstream 450524 12718767 ~ 12729850 (+) True CI01000304_12718988_12729338
CI01000304_12653236_12670625.mRNA mRNA upstream 509391 12652837 ~ 12670983 (+) True CI01000304_12653236_12670625
CI01000304_13331382_13338351.mRNA mRNA downstream 150796 13331382 ~ 13339248 (+) True CI01000304_13331382_13338351
CI01000304_13435609_13438459.mRNA mRNA downstream 254921 13435507 ~ 13438730 (+) True CI01000304_13435609_13438459
CI01000304_13578347_13595075.mRNA mRNA downstream 397463 13578049 ~ 13595097 (+) False CI01000304_13578347_13595075
CI01000304_13613026_13686604.mRNA mRNA downstream 432440 13613026 ~ 13686604 (+) True CI01000304_13613026_13686604
CI01000304_13731299_13731640.mRNA mRNA downstream 550656 13731242 ~ 13731650 (+) True CI01000304_13731299_13731640
TU488854 other upstream 741288 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other upstream 741288 12436554 ~ 12436605 (+) True G425718
TU488852 other upstream 741288 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU487556 other upstream 2624670 10555614 ~ 10555704 (+) True G424559
TU487195 other upstream 2987479 10189315 ~ 10189404 (+) True G424251
TU489575 other downstream 375865 13556451 ~ 13573943 (+) True G426349
TU489538 other downstream 1149462 14330048 ~ 14330886 (+) True G426312
TU490061 other downstream 1768304 14948890 ~ 14950592 (+) True G426828
TU491290 other downstream 2704868 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 2902644 16083230 ~ 16083714 (+) True G428017

Expression Profile