RNA id: TU489702


Basic Information

Item Value
RNA id TU489702
length 219
lncRNA type intronic
GC content 0.34
exon number 1
gene id G426476
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 13430416 ~ 13430634 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAACAAAAATGAGATTTCTTTTAAAGAAAAAATACATTGCAAATTGCGTATAGGGATGGTTTAACCAAAAAATTTAAGTTCTGTCATCATTTACTTCACCTCATACCCCTGTATGCATTTTGAAGAGCACTGGGAACCAAACAACATCGGAGCCCATTGACTTCCATAGTAGACCAAGAATGACCCATATTTCTCAAAATATCTTCTTATGTTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489685 lncRNA upstream 57032 13373103 ~ 13373384 (+) True G426459
TU489684 lncRNA upstream 57444 13372593 ~ 13372972 (+) True G426458
TU489658 lncRNA upstream 126819 13289725 ~ 13303597 (+) True G426432
TU489580 lncRNA upstream 215663 13210695 ~ 13214753 (+) True G426354
TU489626 lncRNA upstream 248555 13181633 ~ 13181861 (+) True G426400
TU489550 lncRNA downstream 12643 13443277 ~ 13444447 (+) True G426324
TU489608 lncRNA downstream 22700 13453334 ~ 13455351 (+) True G426382
TU489721 lncRNA downstream 53998 13484632 ~ 13485003 (+) True G426492
TU489722 lncRNA downstream 54743 13485377 ~ 13485578 (+) True G426493
TU489723 lncRNA downstream 55098 13485732 ~ 13485957 (+) True G426494
CI01000304_13331382_13338351.mRNA mRNA upstream 91168 13331382 ~ 13339248 (+) True CI01000304_13331382_13338351
CI01000304_12828251_12839287.mRNA mRNA upstream 590425 12827314 ~ 12839991 (+) True CI01000304_12828251_12839287
CI01000304_12819247_12825161.mRNA mRNA upstream 605103 12817979 ~ 12825313 (+) True CI01000304_12819247_12825161
CI01000304_12744525_12773999.mRNA mRNA upstream 656104 12744059 ~ 12774312 (+) True CI01000304_12744525_12773999
CI01000304_12718988_12729338.mRNA mRNA upstream 700566 12718767 ~ 12729850 (+) True CI01000304_12718988_12729338
CI01000304_13435609_13438459.mRNA mRNA downstream 4873 13435507 ~ 13438730 (+) True CI01000304_13435609_13438459
CI01000304_13578347_13595075.mRNA mRNA downstream 147415 13578049 ~ 13595097 (+) False CI01000304_13578347_13595075
CI01000304_13613026_13686604.mRNA mRNA downstream 182392 13613026 ~ 13686604 (+) True CI01000304_13613026_13686604
CI01000304_13731299_13731640.mRNA mRNA downstream 300608 13731242 ~ 13731650 (+) True CI01000304_13731299_13731640
CI01000304_13744571_13748279.mRNA mRNA downstream 313041 13743675 ~ 13748318 (+) True CI01000304_13744571_13748279
TU488854 other upstream 991330 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other upstream 991330 12436554 ~ 12436605 (+) True G425718
TU488852 other upstream 991330 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU487556 other upstream 2874712 10555614 ~ 10555704 (+) True G424559
TU487195 other upstream 3237521 10189315 ~ 10189404 (+) True G424251
TU489575 other downstream 125817 13556451 ~ 13573943 (+) True G426349
TU489538 other downstream 899414 14330048 ~ 14330886 (+) True G426312
TU490061 other downstream 1518256 14948890 ~ 14950592 (+) True G426828
TU491290 other downstream 2454820 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 2652596 16083230 ~ 16083714 (+) True G428017

Expression Profile