RNA id: TU489722


Basic Information

Item Value
RNA id TU489722
length 202
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G426493
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 13485377 ~ 13485578 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAGAAACTTTCTCATAATTATGACTTAGTATCTCATTATATTGAGAAAGTTTCTCGTAATAATGACATAGTATCTCATAATAATGAGAAACTTTCTCGTAATAATGACTTAGTTTCTCATAATAACGAGAAACTTTCTCGTAATTATGACTTAGTTTCTCATAATAACGAGAAACTTTCTCGTAATTATGACTTAGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489721 lncRNA upstream 374 13484632 ~ 13485003 (+) True G426492
TU489608 lncRNA upstream 30026 13453334 ~ 13455351 (+) True G426382
TU489550 lncRNA upstream 40930 13443277 ~ 13444447 (+) True G426324
TU489702 lncRNA upstream 54743 13430416 ~ 13430634 (+) True G426476
TU489685 lncRNA upstream 111993 13373103 ~ 13373384 (+) True G426459
TU489723 lncRNA downstream 154 13485732 ~ 13485957 (+) True G426494
TU489724 lncRNA downstream 401 13485979 ~ 13486216 (+) True G426495
TU489726 lncRNA downstream 19214 13504792 ~ 13505142 (+) True G426497
TU489727 lncRNA downstream 29328 13514906 ~ 13515832 (+) True G426498
TU489586 lncRNA downstream 33846 13519424 ~ 13533081 (+) True G426360
CI01000304_13435609_13438459.mRNA mRNA upstream 46647 13435507 ~ 13438730 (+) True CI01000304_13435609_13438459
CI01000304_13331382_13338351.mRNA mRNA upstream 146129 13331382 ~ 13339248 (+) True CI01000304_13331382_13338351
CI01000304_12828251_12839287.mRNA mRNA upstream 645386 12827314 ~ 12839991 (+) True CI01000304_12828251_12839287
CI01000304_12819247_12825161.mRNA mRNA upstream 660064 12817979 ~ 12825313 (+) True CI01000304_12819247_12825161
CI01000304_12744525_12773999.mRNA mRNA upstream 711065 12744059 ~ 12774312 (+) True CI01000304_12744525_12773999
CI01000304_13578347_13595075.mRNA mRNA downstream 92471 13578049 ~ 13595097 (+) False CI01000304_13578347_13595075
CI01000304_13613026_13686604.mRNA mRNA downstream 127448 13613026 ~ 13686604 (+) True CI01000304_13613026_13686604
CI01000304_13731299_13731640.mRNA mRNA downstream 245664 13731242 ~ 13731650 (+) True CI01000304_13731299_13731640
CI01000304_13744571_13748279.mRNA mRNA downstream 258097 13743675 ~ 13748318 (+) True CI01000304_13744571_13748279
CI01000304_13932457_13932762.mRNA mRNA downstream 446371 13931949 ~ 13933084 (+) True CI01000304_13932457_13932762
TU488854 other upstream 1046291 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other upstream 1046291 12436554 ~ 12436605 (+) True G425718
TU488852 other upstream 1046291 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU487556 other upstream 2929673 10555614 ~ 10555704 (+) True G424559
TU487195 other upstream 3292482 10189315 ~ 10189404 (+) True G424251
TU489575 other downstream 70873 13556451 ~ 13573943 (+) True G426349
TU489538 other downstream 844470 14330048 ~ 14330886 (+) True G426312
TU490061 other downstream 1463312 14948890 ~ 14950592 (+) True G426828
TU491290 other downstream 2399876 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 2597652 16083230 ~ 16083714 (+) True G428017

Expression Profile