RNA id: TU490320


Basic Information

Item Value
RNA id TU490320
length 330
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G427049
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 13485756 ~ 13486085 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAGCACTTGCCCAGTCATAAACCTTCATTCCAGTGATATTCCTACAGAAAACACCTTTTAAGATGTTTATGACTCATTAGAATGTATGCAAAAGACAGCTTTCCAGGTGAAGCGTTCTTTAACAGACTTGGATATGTAGGTGTGTGCTGTCTTATCATTCCTCTATCTGTTTGAAATCCATGGATCACCACTCTGTGTTTCTGCTTGTTCATACACAAAAATACAAATGAATAAACGACTATATCCCGTCTCATATGGCTACTGATAATTTATCAATAATGCTATTTATTTAATGATATTATAGATTACACTTTTGCAGAACGTGCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU490256 lncRNA downstream 55731 13403026 ~ 13430025 (-) True CI01000304_13406343_13432947
TU490262 lncRNA downstream 86086 13398380 ~ 13399670 (-) True G426991
TU490254 lncRNA downstream 87889 13395162 ~ 13397867 (-) True G426983
TU490266 lncRNA downstream 105814 13379166 ~ 13379942 (-) True G426995
TU490280 lncRNA downstream 112097 13373086 ~ 13373659 (-) True G427009
TU490321 lncRNA upstream 12947 13499032 ~ 13499264 (-) True G427050
TU490323 lncRNA upstream 16065 13502150 ~ 13502415 (-) True G427052
TU490326 lncRNA upstream 19760 13505845 ~ 13506072 (-) True G427055
TU490271 lncRNA upstream 23994 13510079 ~ 13513826 (-) True G427000
TU490264 lncRNA upstream 44107 13533250 ~ 13533544 (-) True CI01000304_13532811_13534129
CI01000304_13479162_13481853.mRNA mRNA downstream 3462 13478741 ~ 13482294 (-) True CI01000304_13479162_13481853
CI01000304_13444023_13466208.mRNA mRNA downstream 19548 13444023 ~ 13466208 (-) True CI01000304_13444023_13466208
CI01000304_13406343_13432947.mRNA mRNA downstream 52145 13405293 ~ 13433611 (-) False CI01000304_13406343_13432947
CI01000304_13367200_13384209.mRNA mRNA downstream 101218 13366547 ~ 13384538 (-) False CI01000304_13367200_13384209
CI01000304_13342458_13361412.mRNA mRNA downstream 124344 13342420 ~ 13361412 (-) True CI01000304_13342458_13361412
CI01000304_13517595_13527868.mRNA mRNA upstream 31091 13517176 ~ 13527868 (-) True CI01000304_13517595_13527868
CI01000304_13529418_13530787.mRNA mRNA upstream 43045 13529130 ~ 13530787 (-) False CI01000304_13529418_13530787
CI01000304_13532811_13534129.mRNA mRNA upstream 46726 13532811 ~ 13534129 (-) False CI01000304_13532811_13534129
CI01000304_13541959_13564807.mRNA mRNA upstream 55140 13541225 ~ 13564807 (-) True CI01000304_13541959_13564807
CI01000304_13692322_13711234.mRNA mRNA upstream 205873 13691958 ~ 13711234 (-) True CI01000304_13692322_13711234
TU489350 other downstream 446441 12719497 ~ 12805926 (-) True G426147
TU489325 other downstream 925621 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998
TU489324 other downstream 925621 12559022 ~ 12560135 (-) True CI01000304_12559311_12559998
TU489285 other downstream 1145528 12336701 ~ 12340228 (-) True G426106
TU488688 other downstream 1612850 11868677 ~ 11872906 (-) True G425580
TU490328 other upstream 21556 13507641 ~ 13507922 (-) True G427057
TU490473 other upstream 445706 13931791 ~ 13950548 (-) False G427154
TU490643 other upstream 703383 14189468 ~ 14208299 (-) False G427309
TU490767 other upstream 782338 14268423 ~ 14269571 (-) True CI01000304_14265881_14269102
TU490754 other upstream 797586 14283671 ~ 14286873 (-) True G427362

Expression Profile