RNA id: TU490328


Basic Information

Item Value
RNA id TU490328
length 282
RNA type TUCP
GC content 0.55
exon number 1
gene id G427057
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 13507641 ~ 13507922 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCTGGGAGCAGACATGCTATCTCGGAGTAATGTCCCCTCAGATGAGTGGATGCTCCATCCCCAGACGATTCTCAGAATCTGGGAGATCTTCGGGAGGGCAGAGGTCGACCTCTTCGCCTCAGGAGACAACTCTCACTGCCCAATCTTCTTTTCGAAGGACATAGATGCGCTGGCCCATGACTGGCCCAGCCTCCTTCTTTACGCTTTTCCCCCGATCACTCTGATCCCTCAGGTCATCAGACGAATCAGGGAAGACAATCACAGAGTCCTCCTGGTGGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU490326 lncRNA downstream 1569 13505845 ~ 13506072 (-) True G427055
TU490323 lncRNA downstream 5226 13502150 ~ 13502415 (-) True G427052
TU490321 lncRNA downstream 8377 13499032 ~ 13499264 (-) True G427050
TU490320 lncRNA downstream 21556 13485756 ~ 13486085 (-) True G427049
TU490256 lncRNA downstream 77616 13403026 ~ 13430025 (-) True CI01000304_13406343_13432947
TU490271 lncRNA upstream 2157 13510079 ~ 13513826 (-) True G427000
TU490264 lncRNA upstream 22270 13533250 ~ 13533544 (-) True CI01000304_13532811_13534129
TU490337 lncRNA upstream 81225 13589147 ~ 13589370 (-) True G427064
TU490355 lncRNA upstream 101464 13609386 ~ 13609600 (-) True G427076
TU490359 lncRNA upstream 104216 13612138 ~ 13613990 (-) True G427077
CI01000304_13479162_13481853.mRNA mRNA downstream 25347 13478741 ~ 13482294 (-) True CI01000304_13479162_13481853
CI01000304_13444023_13466208.mRNA mRNA downstream 41433 13444023 ~ 13466208 (-) True CI01000304_13444023_13466208
CI01000304_13406343_13432947.mRNA mRNA downstream 74030 13405293 ~ 13433611 (-) False CI01000304_13406343_13432947
CI01000304_13367200_13384209.mRNA mRNA downstream 123103 13366547 ~ 13384538 (-) False CI01000304_13367200_13384209
CI01000304_13342458_13361412.mRNA mRNA downstream 146229 13342420 ~ 13361412 (-) True CI01000304_13342458_13361412
CI01000304_13517595_13527868.mRNA mRNA upstream 9254 13517176 ~ 13527868 (-) True CI01000304_13517595_13527868
CI01000304_13529418_13530787.mRNA mRNA upstream 21208 13529130 ~ 13530787 (-) False CI01000304_13529418_13530787
CI01000304_13532811_13534129.mRNA mRNA upstream 24889 13532811 ~ 13534129 (-) False CI01000304_13532811_13534129
CI01000304_13541959_13564807.mRNA mRNA upstream 33303 13541225 ~ 13564807 (-) True CI01000304_13541959_13564807
CI01000304_13692322_13711234.mRNA mRNA upstream 184036 13691958 ~ 13711234 (-) True CI01000304_13692322_13711234
TU489350 other downstream 468326 12719497 ~ 12805926 (-) True G426147
TU489325 other downstream 947506 12558854 ~ 12560135 (-) False CI01000304_12559311_12559998
TU489324 other downstream 947506 12559022 ~ 12560135 (-) True CI01000304_12559311_12559998
TU489285 other downstream 1167413 12336701 ~ 12340228 (-) True G426106
TU488688 other downstream 1634735 11868677 ~ 11872906 (-) True G425580
TU490473 other upstream 423869 13931791 ~ 13950548 (-) False G427154
TU490643 other upstream 681546 14189468 ~ 14208299 (-) False G427309
TU490767 other upstream 760501 14268423 ~ 14269571 (-) True CI01000304_14265881_14269102
TU490754 other upstream 775749 14283671 ~ 14286873 (-) True G427362
TU490815 other upstream 853526 14361448 ~ 14361892 (-) True G427423

Expression Profile