RNA id: TCONS_00019734


Basic Information

Item Value
RNA id TCONS_00019734
length 2647
RNA type mRNA
GC content 0.47
exon number 16
gene id XLOC_009892
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23837847 ~ 23977525 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCGCGCCAGTTCGTCGGTATCTTAGGATAAGACAAGTCACTTCCATATTTCATAGTAAACACAAGTATTGAAATGTGGAAACTGCAGCCAACCGAATCTGGAGGGGAAAGTGTCATTCTGCTGGCTGGACAGGAGTATGTGGTTGGCCGTAAGAATTGTGAGATCCTGCTGACCAATGATCAGTCCATCAGCCGTGTTCATGCTGTCCTCACTGTCACTGAGCAGGCAGTCACTCTGAAGGACAGCTCTAAATATGGAACTTTTGTCAATGGTGAGAAGCTTGAGTCTGGCTCCACAAAGACCTTGCAGACGGGATACAAAATCACATTTGGAGTCTTCCAGAGCAAATTCAGTCTGGAGAAAGAGTGTATTGTGGTTTGCTCCTCGTGTGTGGATAATGAAGGGAAAGTCACCCTGTCTCAAGATATTCGCTCTGTTGGAGGACGACTTGTCAGTTCCTGGACCTCTGACTGCACACATCTAGTCATGCCCACTGTAAAAGTCAccataaagACGATCTGTGCGTTGCTGTGCTGTCGACCCATAGTAAAACCTGCGTTCTTCAGTGCGCTTAGCAAAGCTGTGCAGCAGAAACTGCCACTGCCTAAAGCTGAGAGATTTAGGCCTCAAATTGATGAGCCCAGCCTGGCTAGAGATGATGTGGATCTGAGTGCACGACCTGAGAGAAAGAGCCTCTTCAAGGGGAAAACATTCCTGTTTTTGAGCTCTAAACAgATGAAGCGTTTGAGTGTGGCAGTGAGTTGTGGTGGTGGTGTGAGTCAGCTGCTGGACGAGGGCGCTCTGCCTGTCTCACTCCTGGAGTCCAGCAGCACATGTGTGCTCGACATGATCTCAGGAAACTCACAGCCTGTGATTTCTCCAGCCTCCAAGAAGTGGTTGGATTCTGTGGGCCAAATTCTGCACAGAAAAGGTTTGCGCTTTATCACTGAATCTGAGGTTGGATTGGCTGCCATTCATGTCAGTAATCAGACATACTGCAATCCCTGCTCTTCTTTGCAATCAGAATCAGTGAAAACGAATCCAGTCTTTGCCTCAGCAACACTTTCTCAGAGCACGGCTGTGGATGAGACTGCGCTCGCGGCTCCTTCCCAGAATATCACAGCCTATGTCGtcaacactgaaatctcacaggaCCAAAGCAGGATGGTTACAAGTGGGATCAGTGCAGTTGGAGAGACCCCAGAGAAAACCAATCCCACACAGAAAGCCTCAACAACCAATAAACCCTTATCCCTTGGTCAGGAACCTTCCTCTACCCGCATCGTCCAAGAAACAGTGATGTCCTCTGAGAGCTTCAGTGTGGTTGAATCTGAACAGAAGATGAAGAAAGGGTCTGTTGTCTCAGCCAGGGGAAGAGTTGAAGGTCCTGTAAAACAGAAAGCGCCTTCCAGTGGCAACACCACATTAAAACATTCTCCCCAGAAACAGACAGCCCTCACCAGCTTCTTCCAGCCTTCCAGCAAGAAAAGGCCGCGTGAAAGCAGTGCCAGTTCTGTCCAGCCAGAGCCCAAATTCTTCAAGAAAGACATCAAAGATAATGAAGATGACATCCAGCAAAGTTTTTCTGTCAATAGATCTCACAAAACCTCATCAGAGGAGACCAGTCTAGGTCAGGCTTGTGGAACTGGTCAAAACTCTAGCAGCAAGAAAAGAAAGGAACCTGAGCAGGACACCCTATTAGGCGCAGAAGAACCAACAGCTGCTGATGATTTAGAAATGTCACTTGAAGAGCTTGAATTCTTAATGTCCGACGAGATGGATGAGCCTCCGCAGACTGCAGCTAATAAAAAACAACGTCTTGAGTCAGGACTGACTAGCAAAATCAATAGCGAACAATTATCAAATCAGCAAGAGGTCACTGAGTCTAAAGGCAGGAAAGGGGAGAAGAATCAGCAAAGCAGTTCCAGCAATATTCAGAGCATGCAGTTGGACAGAGCAGGACCAGCTGTAACAAATcaggacacacaaacacagtcaaaGAGGTCACCTCCAGATCTGGAAGCACATAGTTCTGCAAACAAGGGGccctcaaaaaacaaaacacccgagCTTGAAGAGGTCAAAAAGGAGGAAGTGTCCTTTGTTGTGaatTCAAGGCCCCAAAATGGCATTTCCCAGACCTCTGAGGCTGTTCTCAAACAGGAAATGCAGGCCTCAACCTCCAATTCCGGACCTAAGAATGACCCCGATCTGCCCAGGAAGCTACTGCAGGTTCAGTTTATGTCTCTAACAGTGAACAACTCTTCCAGATCAAGACCAGGCCCATTACAGACACACAATCCAAATGACAAGAACGTCAAAAGATTTCGCAAGAAAAATGTCCCTGGATTTGATGGGCTGCCTAAGATAATTGGAGGCTCGGATCTGGTGGCTCATAATCGCAGTAAGCACTCTGAACTAGAGGAATGGCTGAGACAGGCAGCAGAGGAGGAGAAGCTGAACGAACGAGAGGAGACTTTGGGAGACGATTTGTTCAGCAGATCCTTCATTTTCAGCACACTTGGAAAGTATGACGTCAATGATTTCCCAGCTGCTTTTAAGTCATTGTTCACAGTTGAGGTCACGCTGGGCTGCGAAGACCCGTCGATATTTCTAACAAGCTCCTGCTGTTTAAACACACAGTGA

Function

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0042770 signal transduction in response to DNA damage biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0007049 cell cycle biological_process
GO:0016233 telomere capping biological_process
GO:0007093 mitotic cell cycle checkpoint biological_process
GO:0007095 mitotic G2 DNA damage checkpoint biological_process
GO:0051321 meiotic cell cycle biological_process
GO:0000723 telomere maintenance biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0006281 DNA repair biological_process
GO:0000781 chromosome, telomeric region cellular_component
GO:0005634 nucleus cellular_component
GO:0030870 Mre11 complex cellular_component
GO:0005694 chromosome cellular_component
GO:0003678 DNA helicase activity molecular_function
GO:0003684 damaged DNA binding molecular_function

KEGG:

id description
ko03440 Homologous recombination
ko04218 Cellular senescence
ko03032 DNA replication proteins
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-041008-35 Predicted to enable damaged DNA binding activity. Predicted to be involved in DNA duplex unwinding; double-strand break repair via homologous recombination; and mitotic G2 DNA damage checkpoint signaling. Predicted to act upstream of or within double-strand break repair; meiotic cell cycle; and telomere maintenance. Predicted to be located in chromosome, telomeric region and nucleus. Predicted to be part of Mre11 complex. Human ortholog(s) of this gene implicated in several diseases, including Nijmegen breakage syndrome; acute lymphoblastic leukemia; aplastic anemia; breast cancer; and reproductive organ cancer (multiple). Orthologous to human NBN (nibrin).

Ensembl:

ensembl_id ENSDART00000131238

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021929 lncRNA upstream 16172 23811601 ~ 23821746 (+) False XLOC_009891
TCONS_00019712 lncRNA upstream 540712 23294686 ~ 23297206 (+) True XLOC_009879
TCONS_00019708 lncRNA upstream 961823 22872860 ~ 22876095 (+) True XLOC_009877
TCONS_00021928 lncRNA upstream 1141422 22695226 ~ 22696496 (+) True XLOC_009875
TCONS_00021927 lncRNA upstream 1182831 22649863 ~ 22655087 (+) False XLOC_009874
TCONS_00019740 lncRNA downstream 41288 23914082 ~ 23915127 (+) True XLOC_009894
TCONS_00019749 lncRNA downstream 74495 23947289 ~ 23948093 (+) True XLOC_009897
TCONS_00019752 lncRNA downstream 88115 23960909 ~ 23962471 (+) False XLOC_009898
TCONS_00019763 lncRNA downstream 106586 23979380 ~ 23980174 (+) True XLOC_009900
TCONS_00021711 lncRNA downstream 111961 23984755 ~ 23991159 (+) False XLOC_009901
TCONS_00019731 mRNA upstream 1996 23811554 ~ 23835922 (+) False XLOC_009891
TCONS_00019732 mRNA upstream 5849 23816933 ~ 23832069 (+) True XLOC_009891
TCONS_00019730 mRNA upstream 28307 23799622 ~ 23809611 (+) True XLOC_009890
TCONS_00019729 mRNA upstream 33492 23796612 ~ 23804426 (+) False XLOC_009890
TCONS_00019726 mRNA upstream 118269 23598908 ~ 23719649 (+) False XLOC_009888
TCONS_00019737 mRNA downstream 18649 23891443 ~ 23902439 (+) True XLOC_009893
TCONS_00019738 mRNA downstream 41149 23913943 ~ 23916263 (+) False XLOC_009894
TCONS_00019739 mRNA downstream 41276 23914070 ~ 23915980 (+) False XLOC_009894
TCONS_00019741 mRNA downstream 48816 23921610 ~ 23922868 (+) False XLOC_009895
TCONS_00019742 mRNA downstream 48983 23921777 ~ 23922741 (+) True XLOC_009895
TCONS_00019728 other upstream 230566 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019718 other upstream 438758 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019682 other upstream 2134239 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019667 other upstream 2924434 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019658 other upstream 3333053 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019751 other downstream 88077 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019767 other downstream 643298 24516092 ~ 24517092 (+) False XLOC_009904
TCONS_00019777 other downstream 1008328 24881122 ~ 24881218 (+) True XLOC_009911
TCONS_00019779 other downstream 1025377 24898171 ~ 24898253 (+) True XLOC_009912
TCONS_00019780 other downstream 1032762 24905556 ~ 24918957 (+) True XLOC_009913

Expression Profile

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