RNA id: TU489586


Basic Information

Item Value
RNA id TU489586
length 272
lncRNA type read_through
GC content 0.47
exon number 2
gene id G426360
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 13519424 ~ 13533081 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGTCAGAAGTATGCTGTGAGGGGAGTTGTATACTTTTTTGGGTTTGGCTATTTGAGTAGTTAGCATGGCAGGTGATTGTTTCTCCATCACTCCAGTCAGGTTTACACAGATGCAGCTCACTGTTCATGTCATAAGATGTGGATGGATGAAGTAAACTTTGACCCTCTCGGCTCCAGGTGAAGTCCACCAGCTCAGGGTTCAGACTCTTCAGAGAGCAAAGCAGATGAATACAGGTGTCATTACTGCTGTTCAGGAGCTGCAGGGACAGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489727 lncRNA upstream 3592 13514906 ~ 13515832 (+) True G426498
TU489726 lncRNA upstream 14282 13504792 ~ 13505142 (+) True G426497
TU489724 lncRNA upstream 33208 13485979 ~ 13486216 (+) True G426495
TU489723 lncRNA upstream 33467 13485732 ~ 13485957 (+) True G426494
TU489722 lncRNA upstream 33846 13485377 ~ 13485578 (+) True G426493
TU489606 lncRNA downstream 13481 13546562 ~ 13550083 (+) True G426380
TU489741 lncRNA downstream 41430 13574511 ~ 13575026 (+) True G426512
TU489747 lncRNA downstream 47756 13580837 ~ 13581043 (+) True G426518
TU489603 lncRNA downstream 82906 13615987 ~ 13618730 (+) True G426377
TU489574 lncRNA downstream 147544 13680625 ~ 13689596 (+) True G426348
CI01000304_13435609_13438459.mRNA mRNA upstream 80694 13435507 ~ 13438730 (+) True CI01000304_13435609_13438459
CI01000304_13331382_13338351.mRNA mRNA upstream 180176 13331382 ~ 13339248 (+) True CI01000304_13331382_13338351
CI01000304_12828251_12839287.mRNA mRNA upstream 679433 12827314 ~ 12839991 (+) True CI01000304_12828251_12839287
CI01000304_12819247_12825161.mRNA mRNA upstream 694111 12817979 ~ 12825313 (+) True CI01000304_12819247_12825161
CI01000304_12744525_12773999.mRNA mRNA upstream 745112 12744059 ~ 12774312 (+) True CI01000304_12744525_12773999
CI01000304_13578347_13595075.mRNA mRNA downstream 44968 13578049 ~ 13595097 (+) False CI01000304_13578347_13595075
CI01000304_13613026_13686604.mRNA mRNA downstream 79945 13613026 ~ 13686604 (+) True CI01000304_13613026_13686604
CI01000304_13731299_13731640.mRNA mRNA downstream 198161 13731242 ~ 13731650 (+) True CI01000304_13731299_13731640
CI01000304_13744571_13748279.mRNA mRNA downstream 210594 13743675 ~ 13748318 (+) True CI01000304_13744571_13748279
CI01000304_13932457_13932762.mRNA mRNA downstream 398868 13931949 ~ 13933084 (+) True CI01000304_13932457_13932762
TU488854 other upstream 1080338 12434972 ~ 12439086 (+) False CI01000304_12437868_12439019
TU488858 other upstream 1080338 12436554 ~ 12436605 (+) True G425718
TU488852 other upstream 1080338 12437804 ~ 12439086 (+) True CI01000304_12437868_12439019
TU487556 other upstream 2963720 10555614 ~ 10555704 (+) True G424559
TU487195 other upstream 3326529 10189315 ~ 10189404 (+) True G424251
TU489575 other downstream 23370 13556451 ~ 13573943 (+) True G426349
TU489538 other downstream 796967 14330048 ~ 14330886 (+) True G426312
TU490061 other downstream 1415809 14948890 ~ 14950592 (+) True G426828
TU491290 other downstream 2352373 15885454 ~ 15889591 (+) True G427860
TU491458 other downstream 2550149 16083230 ~ 16083714 (+) True G428017

Expression Profile